rdd

Type Members

1. class ADAMContext extends Serializable with Logging

2. class ADAMRDDFunctions[T] extends Serializable

3. abstract class ADAMSequenceDictionaryRDDAggregator[T] extends Serializable with Logging

   A class that provides functions to recover a sequence dictionary from a generic RDD of records.

4. class ADAMSpecificRecordSequenceDictionaryRDDAggregator[T] extends ADAMSequenceDictionaryRDDAggregator[T]

   A class that provides functions to recover a sequence dictionary from a generic RDD of records that are defined in Avro.

5. case class Footer(rowGroups: Seq[ParquetRowGroup]) extends Product with Serializable

6. class GenomicRegionPartitioner extends Partitioner with Logging

   GenomicRegionPartitioner partitions ReferencePosition objects into separate, spatially-coherent regions of the genome.

7. class MultiContigNonoverlappingRegions extends Serializable

   Creates a multi-reference-region collection of NonoverlappingRegions -- see the scaladocs to NonoverlappingRegions.

8. class NonoverlappingRegions extends Serializable

   The evaluation of a regionJoin takes place with respect to a complete partition on the total space of the genome.

9. case class ParquetColumnChunk(numValues: Long, dataPageOffset: Long, indexPageOffset: Option[Long], dictionaryPageOffset: Option[Long], uncompressedSize: Long, compressedSize: Long, columnDescriptor: ParquetColumnDescriptor, compressionCodec: CompressionCodec) extends Product with Serializable

10. case class ParquetColumnDescriptor(path: Seq[String], typeName: PrimitiveTypeName, typeLength: Int, maxRep: Int, maxDef: Int) extends Product with Serializable

11. case class ParquetRowGroup(byteSize: Long, rowCount: Long, columnChunks: Seq[ParquetColumnChunk]) extends Product with Serializable