G
Base
GENBANK_TAG
SequenceRecord
GTFFeature
models
GTFParser
features
GZIP
CompressionCodecEnum
Gene
models
GeneContext
models
GeneFeatureRDD
features
GeneratedType
ComparisonTraversalEngine
GeneratorFilter
filters
GenomicRegionPartitioner
rdd
GenotypeAlleleCounts
GenotypesSummaryCounts
GenotypeConditions
predicates
GenotypeField
projections
GenotypeRDDFunctions
variation
GenotypeRecordPASSPredicate
predicates
GenotypeReferenceMapping
ReferenceMappingContext
GenotypesSummary
variation
GenotypesSummaryCounts
variation
GenotypesSummaryFormatting
variation
genbank
SequenceRecord
geneId
Transcript
geneSymbol
DatabaseVariantAnnotationField
generate
ComparisonTraversalEngine
generateAlternateConsensus
Consensus
genotype
RichGenotype
genotypeLikelihoods
FlatGenotypeField
GenotypeField
genotypeQuality
FlatGenotypeField
GenotypeField
genotypeToRichGenotype
RichGenotype
genotypes
VariantContext
genotypesCount
GenotypesSummaryCounts
genotypesCounts
GenotypesSummaryCounts
gerpNr
DatabaseVariantAnnotationField
gerpRs
DatabaseVariantAnnotationField
get
DNAPrefixTrie
ConcordanceTable
getAWSAccessKeyId
SerializableAWSCredentials
getAWSSecretKey
SerializableAWSCredentials
getAttribute
GTFFeature
getBlockCount
BEDFeature
getBlockSizes
BEDFeature
getBlockStarts
BEDFeature
getCallsetSamples
VariantContextRDDFunctions
getChrom
BEDFeature
NarrowPeakFeature
getChromEnd
BEDFeature
NarrowPeakFeature
getChromStart
BEDFeature
NarrowPeakFeature
getConfig
ServoTimer
getCount
ServoTimer
getCurrentRecord
UsableAvroRecordMaterializer
getEnd
GTFFeature
getFeature
GTFFeature
getFrame
GTFFeature
getHadoopCodec
CompressionCodecEnum
getHeader
ADAMVCFOutputFormat
getHostTimings
TaskTimer
getIfExists
DNAPrefixTrie
getIndelsInRegion
IndelTable
getIndex
RecordGroupDictionary
getItemRGB
BEDFeature
getLength
RichCigar
getMax
ServoTimer
getMean
ServoTimer
getMin
ServoTimer
getMonitors
ServoTimer
getName
ServoTimer
BEDFeature
NarrowPeakFeature
getOrElse
DNAPrefixTrie
getOverallTimings
TaskTimer
getPValue
NarrowPeakFeature
getPageReader
PartitionPageReadStore
getPartition
GenomicRegionPartitioner
getPartitions
AvroIndexedParquetRDD
AvroParquetRDD
getPeak
NarrowPeakFeature
getQValue
NarrowPeakFeature
getRecordPredicate
RecordCondition
getReference
MdTag
getReferenceContext
RichAlignmentRecord
getReferenceName
ReferenceMapping
AlignmentRecordReferenceMapping
FeatureReferenceMapping
FlatGenotypeReferenceMapping
GenotypeReferenceMapping
ReferenceRegionReferenceMapping
getReferenceRegion
ReferenceMapping
AlignmentRecordReferenceMapping
FeatureReferenceMapping
FlatGenotypeReferenceMapping
GenotypeReferenceMapping
ReferenceRegionReferenceMapping
getRootConverter
UsableAvroRecordMaterializer
getRowCount
PartitionPageReadStore
getRowGroup
RowGroupIndexEntry
getScore
BEDFeature
GTFFeature
NarrowPeakFeature
getSeqname
GTFFeature
getSequenceRecordsFromElement
ADAMSequenceDictionaryRDDAggregator
ADAMSpecificRecordSequenceDictionaryRDDAggregator
NucleotideContigFragmentRDDFunctions
AlignmentRecordRDDFunctions
VariantContextRDDFunctions
getSignalValue
NarrowPeakFeature
getSource
GTFFeature
getStageTimings
TaskTimer
getStart
GTFFeature
getStrand
BEDFeature
GTFFeature
NarrowPeakFeature
getThickEnd
BEDFeature
getThickStart
BEDFeature
getTotalTime
ServoTimer
getType
RichGenotype
getValue
ServoTimer
globalTable
RecalibrationTable
groupFields
ParquetGroupType
groupName
ParquetGroupType
groupRepetition
ParquetGroupType