converters

Type Members

1. class AlignmentRecordConverter extends Serializable

2. case class AttrKey(adamKey: String, attrConverter: (AnyRef) ⇒ AnyRef, hdrLine: VCFCompoundHeaderLine) extends Product with Serializable

3. class FastqRecordConverter extends Serializable with Logging

4. class SAMRecordConverter extends Serializable

5. class VCFLine extends AnyRef

6. class VCFLineParser extends Iterator[VCFLine]

   VCFLineParser is a line-by-line (streaming) parser for VCF files, written specifically to support light-weight creation of FlatGenotype records from large (multi-Gb, gzipped) VCF files.

7. class VariantContextConverter extends Serializable

   This class converts VCF data to and from ADAM.