rdd

Type Members

1. class ADAMContext extends Serializable with Logging

2. trait ADAMParquetArgs extends AnyRef

3. class ADAMRDDFunctions[T] extends Serializable with Logging

4. trait ADAMSaveAnyArgs extends ADAMSaveArgs

5. trait ADAMSaveArgs extends ADAMParquetArgs

6. abstract class ADAMSequenceDictionaryRDDAggregator[T] extends Serializable with Logging

   A class that provides functions to recover a sequence dictionary from a generic RDD of records.

7. class ADAMSpecificRecordSequenceDictionaryRDDAggregator[T] extends ADAMSequenceDictionaryRDDAggregator[T]

   A class that provides functions to recover a sequence dictionary from a generic RDD of records that are defined in Avro.

8. case class Footer(rowGroups: Seq[ParquetRowGroup]) extends Product with Serializable

9. case class GenomicRegionPartitioner(numParts: Int, seqLengths: Map[String, Long]) extends Partitioner with Logging with Product with Serializable

   GenomicRegionPartitioner partitions ReferencePosition objects into separate, spatially-coherent regions of the genome.

10. class MultiContigNonoverlappingRegions extends Serializable

    Creates a multi-reference-region collection of NonoverlappingRegions -- see the scaladocs to NonoverlappingRegions.

11. class NonoverlappingRegions extends Serializable

    The evaluation of a regionJoin takes place with respect to a complete partition on the total space of the genome.

12. case class ParquetColumnChunk(numValues: Long, dataPageOffset: Long, indexPageOffset: Option[Long], dictionaryPageOffset: Option[Long], uncompressedSize: Long, compressedSize: Long, columnDescriptor: ParquetColumnDescriptor, compressionCodec: CompressionCodec) extends Product with Serializable

13. case class ParquetColumnDescriptor(path: Seq[String], typeName: PrimitiveTypeName, typeLength: Int, maxRep: Int, maxDef: Int) extends Product with Serializable

14. case class ParquetRowGroup(byteSize: Long, rowCount: Long, columnChunks: Seq[ParquetColumnChunk]) extends Product with Serializable