org.bdgenomics.adam.projections

ADAMRecordField

object ADAMRecordField extends FieldEnumeration

This enumeration exist in order to reduce typo errors in the code. It needs to be kept in sync with any changes to ADAMRecord.

This enumeration is necessary because Parquet needs the field string names for predicates and projections.

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited
  1. ADAMRecordField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

    Definition Classes
    FieldEnumeration

  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( -3501153230598116017L )

  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( 7091335633555234129L )

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration

  7. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  10. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration

  11. final def apply(x: Int): Value

    Definition Classes
    Enumeration

  12. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  13. val attributes: SchemaVal

  14. val cigar: SchemaVal

  15. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  16. val duplicateRead: SchemaVal

  17. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  19. val failedVendorQualityChecks: SchemaVal

  20. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  21. val firstOfPair: SchemaVal

  22. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  23. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  24. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  25. val mapq: SchemaVal

  26. val mateAlignmentStart: SchemaVal

  27. val mateMapped: SchemaVal

  28. val mateNegativeStrand: SchemaVal

  29. val mateReference: SchemaVal

  30. val mateReferenceId: SchemaVal

  31. val mateReferenceLength: SchemaVal

  32. val mateReferenceUrl: SchemaVal

  33. final def maxId: Int

    Definition Classes
    Enumeration

  34. val mismatchingPositions: SchemaVal

  35. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  36. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration

  37. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration

  38. final def notify(): Unit

    Definition Classes
    AnyRef

  39. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  40. val origQual: SchemaVal

  41. val primaryAlignment: SchemaVal

  42. val properPair: SchemaVal

  43. val qual: SchemaVal

  44. val readMapped: SchemaVal

  45. val readName: SchemaVal

  46. val readNegativeStrand: SchemaVal

  47. val readPaired: SchemaVal

  48. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration

  49. val recordGroupDescription: SchemaVal

  50. val recordGroupFlowOrder: SchemaVal

  51. val recordGroupId: SchemaVal

  52. val recordGroupKeySequence: SchemaVal

  53. val recordGroupLibrary: SchemaVal

  54. val recordGroupName: SchemaVal

  55. val recordGroupPlatform: SchemaVal

  56. val recordGroupPlatformUnit: SchemaVal

  57. val recordGroupPredictedMedianInsertSize: SchemaVal

  58. val recordGroupRunDateEpoch: SchemaVal

  59. val recordGroupSample: SchemaVal

  60. val recordGroupSequencingCenter: SchemaVal

  61. val recordSchema: Schema

    Definition Classes
    FieldEnumeration

  62. val referenceId: SchemaVal

  63. val referenceLength: SchemaVal

  64. val referenceName: SchemaVal

  65. val referenceUrl: SchemaVal

  66. val secondOfPair: SchemaVal

  67. val sequence: SchemaVal

  68. val start: SchemaVal

  69. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  70. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any

  71. def values: ValueSet

    Definition Classes
    Enumeration

  72. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  73. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  74. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  75. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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