org.bdgenomics.adam.models

# RegionOrdering

#### object RegionOrdering extends ReferenceOrdering[ReferenceRegion]

A sort order that orders all given regions lexicographically by contig and numerically within a single contig, and puts all non-provided regions at the end. Regions are compared by start position first. If start positions are equal, then we compare by end position.

Linear Supertypes
ReferenceOrdering[ReferenceRegion], Ordering[ReferenceRegion], PartialOrdering[ReferenceRegion], Equiv[ReferenceRegion], Serializable, Serializable, Comparator[ReferenceRegion], AnyRef, Any
Ordering

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2. By inheritance

Inherited

1. RegionOrdering
2. ReferenceOrdering
3. Ordering
4. PartialOrdering
5. Equiv
6. Serializable
7. Serializable
8. Comparator
9. AnyRef
10. Any

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1. Public
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### Type Members

1. #### class Ops extends AnyRef

   Definition Classes
     Ordering

### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

2. #### final def !=(arg0: Any): Boolean

   Definition Classes
     Any

3. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

4. #### final def ==(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

5. #### final def ==(arg0: Any): Boolean

   Definition Classes
     Any

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

8. #### def compare(a: ReferenceRegion, b: ReferenceRegion): Int

   Definition Classes
     ReferenceOrdering → Ordering → Comparator

9. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

10. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

11. #### def equiv(x: ReferenceRegion, y: ReferenceRegion): Boolean

    Definition Classes
      Ordering → PartialOrdering → Equiv

12. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

13. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

14. #### def gt(x: ReferenceRegion, y: ReferenceRegion): Boolean

    Definition Classes
      Ordering → PartialOrdering

15. #### def gteq(x: ReferenceRegion, y: ReferenceRegion): Boolean

    Definition Classes
      Ordering → PartialOrdering

16. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

17. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

18. #### def lt(x: ReferenceRegion, y: ReferenceRegion): Boolean

    Definition Classes
      Ordering → PartialOrdering

19. #### def lteq(x: ReferenceRegion, y: ReferenceRegion): Boolean

    Definition Classes
      Ordering → PartialOrdering

20. #### def max(x: ReferenceRegion, y: ReferenceRegion): ReferenceRegion

    Definition Classes
      Ordering

21. #### def min(x: ReferenceRegion, y: ReferenceRegion): ReferenceRegion

    Definition Classes
      Ordering

22. #### implicit def mkOrderingOps(lhs: ReferenceRegion): Ops

    Definition Classes
      Ordering

23. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

24. #### final def notify(): Unit

    Definition Classes
      AnyRef

25. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

26. #### def on[U](f: (U) ⇒ ReferenceRegion): Ordering[U]

    Definition Classes
      Ordering

27. #### def reverse: Ordering[ReferenceRegion]

    Definition Classes
      Ordering → PartialOrdering

28. #### def reversed(): Comparator[ReferenceRegion]

    Definition Classes
      Comparator

29. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

30. #### def thenComparing[U <: Comparable[_ >: U]](arg0: Function[_ >: ReferenceRegion, _ <: U]): Comparator[ReferenceRegion]

    Definition Classes
      Comparator

31. #### def thenComparing[U](arg0: Function[_ >: ReferenceRegion, _ <: U], arg1: Comparator[_ >: U]): Comparator[ReferenceRegion]

    Definition Classes
      Comparator

32. #### def thenComparing(arg0: Comparator[_ >: ReferenceRegion]): Comparator[ReferenceRegion]

    Definition Classes
      Comparator

33. #### def thenComparingDouble(arg0: ToDoubleFunction[_ >: ReferenceRegion]): Comparator[ReferenceRegion]

    Definition Classes
      Comparator

34. #### def thenComparingInt(arg0: ToIntFunction[_ >: ReferenceRegion]): Comparator[ReferenceRegion]

    Definition Classes
      Comparator

35. #### def thenComparingLong(arg0: ToLongFunction[_ >: ReferenceRegion]): Comparator[ReferenceRegion]

    Definition Classes
      Comparator

36. #### def toString(): String

    Definition Classes
      AnyRef → Any

37. #### def tryCompare(x: ReferenceRegion, y: ReferenceRegion): Some[Int]

    Definition Classes
      Ordering → PartialOrdering

38. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

39. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

40. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from ReferenceOrdering[ReferenceRegion]

### Inherited from Ordering[ReferenceRegion]

### Inherited from PartialOrdering[ReferenceRegion]

### Inherited from Equiv[ReferenceRegion]

### Inherited from Serializable

### Inherited from Comparator[ReferenceRegion]

### Inherited from AnyRef

### Inherited from Any

### Ungrouped