org.bdgenomics.adam.models

# RecordGroup

#### case class RecordGroup(sample: String, recordGroupName: String, sequencingCenter: Option[String] = scala.None, description: Option[String] = scala.None, runDateEpoch: Option[Long] = scala.None, flowOrder: Option[String] = scala.None, keySequence: Option[String] = scala.None, library: Option[String] = scala.None, predictedMedianInsertSize: Option[Int] = scala.None, platform: Option[String] = scala.None, platformUnit: Option[String] = scala.None) extends Product with Serializable

A record group represents a set of reads that were sequenced/processed/prepped/analyzed together.

sample

  The sample these reads are from.

recordGroupName

  The name of this record group.

sequencingCenter

  The optional name of the place where these reads were sequenced.

description

  An optional description for this record group.

runDateEpoch

  An optional Unix epoch timestamp for when these reads were run through the sequencer.

flowOrder

  An optional string of nucleotides that were used for each flow of each read.

keySequence

  An optional string of nucleotides that are the key for this read.

library

  An optional library name.

predictedMedianInsertSize

  An optional prediction of the read insert size for this library prep.

platform

  An optional description for the platform this group was sequenced on.

platformUnit

  An optional ID for the sequencer this group was sequenced on.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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1. RecordGroup
2. Serializable
3. Serializable
4. Product
5. Equals
6. AnyRef
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### Instance Constructors

1. #### new RecordGroup(sample: String, recordGroupName: String, sequencingCenter: Option[String] = scala.None, description: Option[String] = scala.None, runDateEpoch: Option[Long] = scala.None, flowOrder: Option[String] = scala.None, keySequence: Option[String] = scala.None, library: Option[String] = scala.None, predictedMedianInsertSize: Option[Int] = scala.None, platform: Option[String] = scala.None, platformUnit: Option[String] = scala.None)

   sample

     The sample these reads are from.

   recordGroupName

     The name of this record group.

   sequencingCenter

     The optional name of the place where these reads were sequenced.

   description

     An optional description for this record group.

   runDateEpoch

     An optional Unix epoch timestamp for when these reads were run through the sequencer.

   flowOrder

     An optional string of nucleotides that were used for each flow of each read.

   keySequence

     An optional string of nucleotides that are the key for this read.

   library

     An optional library name.

   predictedMedianInsertSize

     An optional prediction of the read insert size for this library prep.

   platform

     An optional description for the platform this group was sequenced on.

   platformUnit

     An optional ID for the sequencer this group was sequenced on.

### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

2. #### final def !=(arg0: Any): Boolean

   Definition Classes
     Any

3. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

4. #### final def ==(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

5. #### final def ==(arg0: Any): Boolean

   Definition Classes
     Any

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

8. #### val description: Option[String]

   An optional description for this record group.

9. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

10. #### def equals(o: Any): Boolean

    Compares equality to another object.

    Compares equality to another object. Only checks equality via the sample and recordGroupName fields.

    o

      Object to compare against.

    returns

      Returns true if the object is a RecordGroup, and the sample and group name are equal. Else, returns false.

    Definition Classes
      RecordGroup → Equals → AnyRef → Any

11. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

12. #### val flowOrder: Option[String]

    An optional string of nucleotides that were used for each flow of each read.

13. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

14. #### def hashCode(): Int

    Generates a hash from the sample and record group name fields.

    Generates a hash from the sample and record group name fields.

    returns

      Hash code for this object.

    Definition Classes
      RecordGroup → AnyRef → Any

15. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

16. #### val keySequence: Option[String]

    An optional string of nucleotides that are the key for this read.

17. #### val library: Option[String]

    An optional library name.

18. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

19. #### final def notify(): Unit

    Definition Classes
      AnyRef

20. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

21. #### val platform: Option[String]

    An optional description for the platform this group was sequenced on.

22. #### val platformUnit: Option[String]

    An optional ID for the sequencer this group was sequenced on.

23. #### val predictedMedianInsertSize: Option[Int]

    An optional prediction of the read insert size for this library prep.

24. #### val recordGroupName: String

    The name of this record group.

25. #### val runDateEpoch: Option[Long]

    An optional Unix epoch timestamp for when these reads were run through the sequencer.

26. #### val sample: String

    The sample these reads are from.

27. #### val sequencingCenter: Option[String]

    The optional name of the place where these reads were sequenced.

28. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

29. #### def toMetadata: RecordGroupMetadata

    Converts this into an Avro RecordGroupMetadata description for serialization to disk.

    Converts this into an Avro RecordGroupMetadata description for serialization to disk.

    returns

      Returns Avro version of RecordGroup.

30. #### def toSAMReadGroupRecord(): SAMReadGroupRecord

    Converts a record group into a SAM formatted record group.

    Converts a record group into a SAM formatted record group.

    returns

      A SAM formatted record group.

31. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

32. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

33. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from AnyRef

### Inherited from Any

### Ungrouped