org.bdgenomics.adam.rdd

# InnerTreeRegionJoinAndGroupByRight

#### case class InnerTreeRegionJoinAndGroupByRight[T, U]()(implicit evidence$5: ClassTag[T], evidence$6: ClassTag[U]) extends RegionJoin[T, U, Iterable[T], U] with TreeRegionJoin[T, U, Iterable[T], U] with Product with Serializable

Performs an inner region join, followed logically by grouping by the right value. This is implemented without any shuffling; the join naturally returns values on the left grouped by the right value.

Linear Supertypes
Product, Equals, TreeRegionJoin[T, U, Iterable[T], U], RegionJoin[T, U, Iterable[T], U], Serializable, Serializable, AnyRef, Any
Ordering

1. Alphabetic
2. By inheritance

Inherited

1. InnerTreeRegionJoinAndGroupByRight
2. Product
3. Equals
4. TreeRegionJoin
5. RegionJoin
6. Serializable
7. Serializable
8. AnyRef
9. Any

1. Hide All
2. Show all

Learn more about member selection
Visibility

1. Public
2. All

### Instance Constructors

1. #### new InnerTreeRegionJoinAndGroupByRight()(implicit arg0: ClassTag[T], arg1: ClassTag[U])

### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

2. #### final def !=(arg0: Any): Boolean

   Definition Classes
     Any

3. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

4. #### final def ==(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

5. #### final def ==(arg0: Any): Boolean

   Definition Classes
     Any

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def broadcastAndJoin(tree: IntervalArray[ReferenceRegion, T], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

8. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

9. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

10. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

11. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

12. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

13. #### def join(broadcastTree: Broadcast[IntervalArray[ReferenceRegion, T]], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

14. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

15. #### final def notify(): Unit

    Definition Classes
      AnyRef

16. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

17. #### def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    baseRDD

      The 'left' side of the join

    joinedRDD

      The 'right' side of the join

    returns

      An RDD of pairs (Iterable[x], y), where the Iterable[x] is from baseRDD, y is from joinedRDD, and all values in the Iterable[x] are aligned at regions that overlap the region corresponding to y. If the iterable is empty, the key-value pair is filtered out.

    Definition Classes
      InnerTreeRegionJoinAndGroupByRight → RegionJoin

18. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

19. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

20. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

21. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Product

### Inherited from Equals

### Inherited from TreeRegionJoin[T, U, Iterable[T], U]

### Inherited from RegionJoin[T, U, Iterable[T], U]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped