org.bdgenomics.adam.sql

Feature

class Feature extends Product

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Product, Equals, AnyRef, Any
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  2. Product
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Instance Constructors

  1. new Feature(featureId: Option[String], name: Option[String], source: Option[String], featureType: Option[String], contigName: Option[String], start: Option[Long], end: Option[Long], strand: Option[String], phase: Option[Int], frame: Option[Int], score: Option[Double], geneId: Option[String], transcriptId: Option[String], exonId: Option[String], aliases: Seq[String], parentIds: Seq[String], target: Option[String], gap: Option[String], derivesFrom: Option[String], notes: Seq[String], dbxrefs: Seq[Dbxref], ontologyTerms: Seq[OntologyTerm], circular: Option[Boolean], attributes: Map[String, String])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. val aliases: Seq[String]

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  8. val attributes: Map[String, String]

  9. def canEqual(that: Any): Boolean

    Definition Classes
    Feature → Equals

  10. val circular: Option[Boolean]

  11. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  12. val contigName: Option[String]

  13. val dbxrefs: Seq[Dbxref]

  14. val derivesFrom: Option[String]

  15. val end: Option[Long]

  16. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  17. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  18. val exonId: Option[String]

  19. val featureId: Option[String]

  20. val featureType: Option[String]

  21. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  22. val frame: Option[Int]

  23. val gap: Option[String]

  24. val geneId: Option[String]

  25. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  26. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  27. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  28. val name: Option[String]

  29. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  30. val notes: Seq[String]

  31. final def notify(): Unit

    Definition Classes
    AnyRef

  32. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  33. val ontologyTerms: Seq[OntologyTerm]

  34. val parentIds: Seq[String]

  35. val phase: Option[Int]

  36. def productArity: Int

    Definition Classes
    Feature → Product

  37. def productElement(i: Int): Any

    Definition Classes
    Feature → Product

  38. def productIterator: Iterator[Any]

    Definition Classes
    Product

  39. def productPrefix: String

    Definition Classes
    Product

  40. val score: Option[Double]

  41. val source: Option[String]

  42. val start: Option[Long]

  43. val strand: Option[String]

  44. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  45. val target: Option[String]

  46. def toAvro: formats.avro.Feature

  47. def toString(): String

    Definition Classes
    AnyRef → Any

  48. val transcriptId: Option[String]

  49. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  50. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  51. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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