org.bdgenomics.adam.cli

# WigFix2Bed

###
Related Docs: class WigFix2Bed | package cli

#### object WigFix2Bed extends BDGCommandCompanion

WigFix2Bed (accessible as the command "wigfix2bed" through the CLI) takes fixed wiggle file and converts it to a BED formatted file. The wiggle file is a text based format that implements run-length encoding, without any guarantees where the sync markers are. This makes it difficult to use as a "splittable" format, and necessitates processing the file locally.

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BDGCommandCompanion, AnyRef, Any
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1. WigFix2Bed
2. BDGCommandCompanion
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### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### def apply(cmdLine: Array[String]): WigFix2Bed

   Definition Classes
     WigFix2Bed → BDGCommandCompanion

5. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

6. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

7. #### val commandDescription: String

   Definition Classes
     WigFix2Bed → BDGCommandCompanion

8. #### val commandName: String

   Definition Classes
     WigFix2Bed → BDGCommandCompanion

9. #### val declPattern: Regex

10. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

11. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

12. #### val featPattern: Regex

13. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

14. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

15. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

16. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

17. #### def main(cmdLine: Array[String]): Unit

    Definition Classes
      BDGCommandCompanion

18. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

19. #### final def notify(): Unit

    Definition Classes
      AnyRef

20. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

21. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

22. #### def toString(): String

    Definition Classes
      AnyRef → Any

23. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

24. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
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      @throws( ... )

25. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
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      @throws( ... )

### Inherited from BDGCommandCompanion

### Inherited from AnyRef

### Inherited from Any

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