org.bdgenomics.adam.rich

# ReferenceSequenceContext

###
Related Doc: package rich

#### case class ReferenceSequenceContext(pos: Option[ReferencePosition], referenceBase: Option[Char], cigarElement: CigarElement, cigarElementOffset: Int) extends Product with Serializable

Represents information on the reference relative to a particular residue

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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1. ReferenceSequenceContext
2. Serializable
3. Serializable
4. Product
5. Equals
6. AnyRef
7. Any

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Visibility

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### Instance Constructors

1. #### new ReferenceSequenceContext(pos: Option[ReferencePosition], referenceBase: Option[Char], cigarElement: CigarElement, cigarElementOffset: Int)

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### val cigarElement: CigarElement

6. #### val cigarElementOffset: Int

7. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

8. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

9. #### def finalize(): Unit

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )

10. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

11. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

12. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

13. #### final def notify(): Unit

    Definition Classes
      AnyRef

14. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

15. #### val pos: Option[ReferencePosition]

16. #### val referenceBase: Option[Char]

17. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

18. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

19. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

20. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from AnyRef

### Inherited from Any

### Ungrouped