org.bdgenomics.adam.instrumentation

# Timers

###
Related Doc: package instrumentation

#### object Timers extends Metrics

Contains Timers that are used to instrument ADAM.

Linear Supertypes
Metrics, Serializable, Serializable, AnyRef, Any
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Inherited

1. Timers
2. Metrics
3. Serializable
4. Serializable
5. AnyRef
6. Any

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### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### val BAMLoad: Timer

5. #### val BQSRInDriver: Timer

6. #### val BuildingTrees: Timer

7. #### val ComputeCovariates: Timer

8. #### val ComputeQualityScore: Timer

9. #### val ConvertToSAM: Timer

10. #### val ConvertToSAMRecord: Timer

11. #### val CreateIndelRealignmentTargets: Timer

12. #### val CreateKnownSnpsTable: Timer

13. #### val CreateReferencePositionPair: Timer

14. #### val FindTargets: Timer

15. #### val GetExtraValues: Timer

16. #### val GetReferenceFromReads: Timer

17. #### val GrowingTrees: Timer

18. #### val JoinTargets: Timer

19. #### val LoadAlignmentRecords: Timer

20. #### val LoadFragments: Timer

21. #### val MapTargets: Timer

22. #### val MarkDuplicatesInDriver: Timer

23. #### val MarkReads: Timer

24. #### val ObservationAccumulatorComb: Timer

25. #### val ObservationAccumulatorSeq: Timer

26. #### val ParquetLoad: Timer

27. #### val PerformDuplicateMarking: Timer

28. #### val RealignIndelsInDriver: Timer

29. #### val RealignTargetGroup: Timer

30. #### val RecalibrateRead: Timer

31. #### val RunningMapSideJoin: Timer

32. #### val SAMSave: Timer

33. #### val SaveAsADAM: Timer

34. #### val ScoreAndMarkReads: Timer

35. #### val SortByIndex: Timer

36. #### val SortReads: Timer

37. #### val SortTargets: Timer

38. #### val SortingRightSide: Timer

39. #### val SweepReadOverReferenceForQuality: Timer

40. #### val TreeJoin: Timer

41. #### val TrimCigar: Timer

42. #### val TrimLowQualityInDriver: Timer

43. #### val TrimMDTag: Timer

44. #### val TrimRead: Timer

45. #### val TrimReadsInDriver: Timer

46. #### val WriteADAMRecord: Timer

47. #### val WriteBAMRecord: Timer

48. #### val WriteCRAMRecord: Timer

49. #### val WriteSAMRecord: Timer

50. #### final def asInstanceOf[T0]: T0

    Definition Classes
      Any

51. #### val clock: Clock

    Definition Classes
      Metrics

52. #### def clone(): AnyRef

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

53. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

54. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

55. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

56. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

57. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

58. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

59. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

60. #### final def notify(): Unit

    Definition Classes
      AnyRef

61. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

62. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

63. #### def timer(name: String): Timer

    Definition Classes
      Metrics

64. #### def toString(): String

    Definition Classes
      AnyRef → Any

65. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

66. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

67. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Metrics

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped