org.bdgenomics.adam.rdd.fragment

# InterleavedFASTQInFormatter

###
Related Doc: package fragment

#### object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, FragmentRDD, InterleavedFASTQInFormatter] with Serializable

InFormatter companion that creates an InFormatter that writes interleaved FASTQ.

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Serializable, Serializable, InFormatterCompanion[Fragment, FragmentRDD, InterleavedFASTQInFormatter], AnyRef, Any
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1. InterleavedFASTQInFormatter
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### Value Members

1. #### final def !=(arg0: Any): Boolean

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2. #### final def ##(): Int

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3. #### final def ==(arg0: Any): Boolean

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4. #### val WRITE_ORIGINAL_QUAL: String

   Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written.

   Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written. True indicates to write the original qualities. The default is false.

5. #### val WRITE_SUFFIXES: String

   Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair.

   Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair. Default is false (no suffixes).

6. #### def apply(gRdd: FragmentRDD): InterleavedFASTQInFormatter

   Builds an InterleavedFASTQInFormatter to write Interleaved FASTQ.

   Builds an InterleavedFASTQInFormatter to write Interleaved FASTQ.

   gRdd

     GenomicRDD of Fragments. Used to get HadoopConfiguration.

   returns

     Returns a new Interleaved FASTQ InFormatter.

   Definition Classes
     InterleavedFASTQInFormatter → InFormatterCompanion

7. #### final def asInstanceOf[T0]: T0

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8. #### def clone(): AnyRef

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9. #### final def eq(arg0: AnyRef): Boolean

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10. #### def equals(arg0: Any): Boolean

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11. #### def finalize(): Unit

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12. #### final def getClass(): Class[_]

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13. #### def hashCode(): Int

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14. #### final def isInstanceOf[T0]: Boolean

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15. #### final def ne(arg0: AnyRef): Boolean

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16. #### final def notify(): Unit

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17. #### final def notifyAll(): Unit

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18. #### final def synchronized[T0](arg0: ⇒ T0): T0

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19. #### def toString(): String

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20. #### final def wait(): Unit

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21. #### final def wait(arg0: Long, arg1: Int): Unit

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22. #### final def wait(arg0: Long): Unit

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### Inherited from Serializable

### Inherited from InFormatterCompanion[Fragment, FragmentRDD, InterleavedFASTQInFormatter]

### Inherited from AnyRef

### Inherited from Any

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