org.bdgenomics.adam.rdd

# InFormatter

###
Related Doc: package rdd

#### trait InFormatter[T, U <: GenomicRDD[T, U], V <: InFormatter[T, U, V]] extends Serializable

Formats data going into a pipe to an invoked process.

T

  The type of records being formatted.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Known Subclasses
AnySAMInFormatter, BAMInFormatter, BEDInFormatter, GFF3InFormatter, GTFInFormatter, InterleavedFASTQInFormatter, NarrowPeakInFormatter, SAMInFormatter, VCFInFormatter
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Inherited

1. InFormatter
2. Serializable
3. Serializable
4. AnyRef
5. Any

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Visibility

1. Public
2. All

### Abstract Value Members

1. #### abstract val companion: InFormatterCompanion[T, U, V]

   Attributes
     protected

2. #### abstract def write(os: OutputStream, iter: Iterator[T]): Unit

   Writes records from an iterator into an output stream.

   Writes records from an iterator into an output stream.

   os

     An OutputStream connected to a process we are piping to.

   iter

     An iterator of records to write.

### Concrete Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

6. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

7. #### def equals(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

8. #### def finalize(): Unit

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )

9. #### final def getClass(): Class[_]

   Definition Classes
     AnyRef → Any

10. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

11. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

12. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

13. #### final def notify(): Unit

    Definition Classes
      AnyRef

14. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

15. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

16. #### def toString(): String

    Definition Classes
      AnyRef → Any

17. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

18. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

19. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped