org.bdgenomics.adam.rdd

# InFormatterCompanion

###
Related Doc: package rdd

#### trait InFormatterCompanion[T, U <: GenomicRDD[T, U], V <: InFormatter[T, U, V]] extends AnyRef

A trait for singleton objects that build an InFormatter from a GenomicRDD.

Often, when creating an outputstream, we need to add metadata to the output that is not attached to individual records. An example of this is writing a header with contig/read group/format info, as is done with SAM/BAM/VCF.

T

  The type of the records this InFormatter writes out.

U

  The type of the GenomicRDD this companion object understands.

V

  The type of InFormatter this companion object creates.

Linear Supertypes
AnyRef, Any
Known Subclasses
AnySAMInFormatterCompanion, BAMInFormatter, BEDInFormatter, GFF3InFormatter, GTFInFormatter, InterleavedFASTQInFormatter, NarrowPeakInFormatter, SAMInFormatter, VCFInFormatter
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### Abstract Value Members

1. #### abstract def apply(gRdd: U): V

   Creates an InFormatter from a GenomicRDD.

   Creates an InFormatter from a GenomicRDD.

   gRdd

     The GenomicRDD to get metadata from.

   returns

     Returns an InFormatter with attached metadata.

### Concrete Value Members

1. #### final def !=(arg0: Any): Boolean

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2. #### final def ##(): Int

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3. #### final def ==(arg0: Any): Boolean

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4. #### final def asInstanceOf[T0]: T0

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5. #### def clone(): AnyRef

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6. #### final def eq(arg0: AnyRef): Boolean

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7. #### def equals(arg0: Any): Boolean

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8. #### def finalize(): Unit

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9. #### final def getClass(): Class[_]

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10. #### def hashCode(): Int

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11. #### final def isInstanceOf[T0]: Boolean

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12. #### final def ne(arg0: AnyRef): Boolean

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13. #### final def notify(): Unit

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14. #### final def notifyAll(): Unit

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15. #### final def synchronized[T0](arg0: ⇒ T0): T0

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16. #### def toString(): String

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17. #### final def wait(): Unit

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18. #### final def wait(arg0: Long, arg1: Int): Unit

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19. #### final def wait(arg0: Long): Unit

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