Class/Object

org.bdgenomics.adam.rich

RichVariant

Related Docs: object RichVariant | package rich

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case class RichVariant(variant: Variant) extends Product with Serializable

Enriched model for a variant with helper functions.

variant

The variant to enrich.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. RichVariant
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new RichVariant(variant: Variant)

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    variant

    The variant to enrich.

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  7. def equals(o: Any): Boolean

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    Definition Classes
    RichVariant → Equals → AnyRef → Any

  8. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  10. def hashCode(): Int

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    Definition Classes
    RichVariant → AnyRef → Any

  11. def isDeletion: Boolean

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    returns

    True if this variant is a deletion.

  12. def isInsertion: Boolean

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    returns

    True if this variant is an insertion.

  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  14. def isMultipleNucleotideVariant: Boolean

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    returns

    True if this variant is a MNP.

  15. def isSingleNucleotideVariant: Boolean

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    returns

    True if this variant is a SNP.

  16. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  17. final def notify(): Unit

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    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  19. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  20. val variant: Variant

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    The variant to enrich.

  21. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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