MapTargets
Timers
MarkDuplicatesInDriver
Timers
MarkReads
Timers
Match
MdTagEvent
MdTag
models
MdTagEvent
models
Mismatch
MdTagEvent
MultisampleAvroGenomicDataset
rdd
MultisampleGenomicDataset
rdd
makeFormatter
AnySAMInFormatterCompanion BAMInFormatter SAMInFormatter
makeIterator
ShuffleRegionJoin
makePositionMessage
FastqRecordReader
makeWriter
AnySAMInFormatter BAMInFormatter SAMInFormatter
mappingQuality
AlignmentRecordField AlignmentRecord
mapq0
DefaultHeaderLines
mapq0Reads
VariantCallingAnnotationsField VariantCallingAnnotations
markDuplicates
FragmentDataset AlignmentRecordDataset
matches
MdTag
mateAlignmentStart
AlignmentRecordField AlignmentRecord
mateMapped
AlignmentRecordField AlignmentRecord
mateNegativeStrand
AlignmentRecordField AlignmentRecord
mateReferenceName
AlignmentRecordField AlignmentRecord
md5
SequenceRecord ReferenceField Reference
mdTag
IncorrectMDTagException RichAlignmentRecord
merge
ReferenceRegion
mergeFragments
NucleotideContigFragmentDataset
messages
TranscriptEffectField TranscriptEffect
minReadDepth
DefaultHeaderLines GenotypeField Genotype
minValue
PhredUtils
mismatchedBase
MdTag
mismatches
MdTag
mismatchingPositions
AlignmentRecordField AlignmentRecord
models
adam
moveAlignment
MdTag
mqRankSum
VariantCallingAnnotationsField VariantCallingAnnotations