org.bdgenomics.adam.rdd.fragment

# InterleavedFASTQInFormatter

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Related Docs: object InterleavedFASTQInFormatter | package fragment

#### class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging

Linear Supertypes
Logging, InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter], Serializable, Serializable, AnyRef, Any
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1. InterleavedFASTQInFormatter
2. Logging
3. InFormatter
4. Serializable
5. Serializable
6. AnyRef
7. Any

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### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

5. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

6. #### val companion: InterleavedFASTQInFormatter.type

   Attributes
     protected
   Definition Classes
     InterleavedFASTQInFormatter → InFormatter

7. #### def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

   Attributes
     protected
   Definition Classes
     Logging

8. #### def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit

   Attributes
     protected
   Definition Classes
     Logging

9. #### def debug(msg: ⇒ Any): Unit

   Attributes
     protected
   Definition Classes
     Logging

10. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

11. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

12. #### def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

13. #### def error(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

14. #### def error(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

15. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

16. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

17. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

18. #### def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

19. #### def info(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

20. #### def info(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

21. #### def isDebugEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

22. #### def isErrorEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

23. #### def isInfoEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

24. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

25. #### def isTraceEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

26. #### def isWarnEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

27. #### def logger: Logger

    Attributes
      protected
    Definition Classes
      Logging

28. #### def loggerName: String

    Attributes
      protected
    Definition Classes
      Logging

29. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

30. #### final def notify(): Unit

    Definition Classes
      AnyRef

31. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

32. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

33. #### def toString(): String

    Definition Classes
      AnyRef → Any

34. #### def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

35. #### def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

36. #### def trace(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

37. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

38. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

39. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

40. #### def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

41. #### def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

42. #### def warn(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

43. #### def write(os: OutputStream, iter: Iterator[Fragment]): Unit

    Writes alignment records to an output stream in interleaved FASTQ format.

    Writes alignment records to an output stream in interleaved FASTQ format.

    os

      An OutputStream connected to a process we are piping to.

    iter

      An iterator of records to write.

    Definition Classes
      InterleavedFASTQInFormatter → InFormatter

### Inherited from Logging

### Inherited from InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped