org.bdgenomics.adam.rdd.variant

# GenotypeDataset

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Related Docs: class GenotypeDataset | package variant

#### object GenotypeDataset extends Serializable

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4. #### def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   ds

     Called genotypes.

   sequences

     A dictionary describing the reference genome.

   samples

     The samples called.

   headerLines

     The VCF header lines that cover all INFO/FORMAT fields needed to represent this genomic dataset of Genotypes.

5. #### def apply(ds: Dataset[Genotype]): GenotypeDataset

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   ds

     Called genotypes.

6. #### def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeDataset

   An genomic dataset containing genotypes called in a set of samples against a given reference genome.

   An genomic dataset containing genotypes called in a set of samples against a given reference genome.

   rdd

     Called genotypes.

   sequences

     A dictionary describing the reference genome.

   samples

     The samples called.

   headerLines

     The VCF header lines that cover all INFO/FORMAT fields needed to represent this genomic dataset of Genotypes.

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8. #### def clone(): AnyRef

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