org.bdgenomics.adam.rdd

# ADAMContext

###
Related Docs: class ADAMContext | package rdd

#### object ADAMContext extends Serializable

This singleton provides an implicit conversion from a SparkContext to the ADAMContext, as well as implicit functions for the Pipe API.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. ADAMContext
2. Serializable
3. Serializable
4. AnyRef
5. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### def ADAMContextFromSession(ss: SparkSession): ADAMContext

   Creates an ADAMContext from a SparkSession.

   Creates an ADAMContext from a SparkSession. Sets active session, including SQLContext, to input session.

   ss

     SparkSession

   returns

     ADAMContext

5. #### implicit def alignmentRecordsToAlignmentRecordsConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

6. #### implicit def alignmentRecordsToCoverageConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Coverage]): CoverageDataset

7. #### implicit def alignmentRecordsToCoverageDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Coverage]): CoverageDataset

8. #### implicit def alignmentRecordsToFeaturesConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Feature]): FeatureDataset

9. #### implicit def alignmentRecordsToFeaturesDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Feature]): FeatureDataset

10. #### implicit def alignmentRecordsToFragmentsConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Fragment]): FragmentDataset

11. #### implicit def alignmentRecordsToFragmentsDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Fragment]): FragmentDataset

12. #### implicit def alignmentRecordsToGenotypesConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Genotype]): GenotypeDataset

13. #### implicit def alignmentRecordsToGenotypesDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Genotype]): GenotypeDataset

14. #### implicit def alignmentRecordsToReadsConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Read]): ReadDataset

15. #### implicit def alignmentRecordsToReadsDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Read]): ReadDataset

16. #### implicit def alignmentRecordsToSequencesConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Sequence]): SequenceDataset

17. #### implicit def alignmentRecordsToSequencesDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Sequence]): SequenceDataset

18. #### implicit def alignmentRecordsToSlicesConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Slice]): SliceDataset

19. #### implicit def alignmentRecordsToSlicesDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Slice]): SliceDataset

20. #### implicit def alignmentRecordsToVariantContextConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[VariantContext]): VariantContextDataset

21. #### implicit def alignmentRecordsToVariantsConversionFn(gDataset: AlignmentRecordDataset, rdd: RDD[Variant]): VariantDataset

22. #### implicit def alignmentRecordsToVariantsDatasetConversionFn(gDataset: AlignmentRecordDataset, ds: Dataset[Variant]): VariantDataset

23. #### final def asInstanceOf[T0]: T0

    Definition Classes
      Any

24. #### def clone(): AnyRef

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

25. #### implicit def coverageToAlignmentRecordsConversionFn(gDataset: CoverageDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

26. #### implicit def coverageToAlignmentRecordsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

27. #### implicit def coverageToCoverageConversionFn(gDataset: CoverageDataset, rdd: RDD[Coverage]): CoverageDataset

28. #### implicit def coverageToFeaturesConversionFn(gDataset: CoverageDataset, rdd: RDD[Feature]): FeatureDataset

29. #### implicit def coverageToFeaturesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Feature]): FeatureDataset

30. #### implicit def coverageToFragmentsConversionFn(gDataset: CoverageDataset, rdd: RDD[Fragment]): FragmentDataset

31. #### implicit def coverageToFragmentsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Fragment]): FragmentDataset

32. #### implicit def coverageToGenotypesConversionFn(gDataset: CoverageDataset, rdd: RDD[Genotype]): GenotypeDataset

33. #### implicit def coverageToGenotypesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Genotype]): GenotypeDataset

34. #### implicit def coverageToReadsConversionFn(gDataset: CoverageDataset, rdd: RDD[Read]): ReadDataset

35. #### implicit def coverageToReadsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Read]): ReadDataset

36. #### implicit def coverageToSequencesConversionFn(gDataset: CoverageDataset, rdd: RDD[Sequence]): SequenceDataset

37. #### implicit def coverageToSequencesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Sequence]): SequenceDataset

38. #### implicit def coverageToSlicesConversionFn(gDataset: CoverageDataset, rdd: RDD[Slice]): SliceDataset

39. #### implicit def coverageToSlicesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Slice]): SliceDataset

40. #### implicit def coverageToVariantContextConversionFn(gDataset: CoverageDataset, rdd: RDD[VariantContext]): VariantContextDataset

41. #### implicit def coverageToVariantsConversionFn(gDataset: CoverageDataset, rdd: RDD[Variant]): VariantDataset

42. #### implicit def coverageToVariantsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Variant]): VariantDataset

43. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

44. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

45. #### implicit def featuresToAlignmentRecordsConversionFn(gDataset: FeatureDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

46. #### implicit def featuresToAlignmentRecordsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

47. #### implicit def featuresToCoverageConversionFn(gDataset: FeatureDataset, rdd: RDD[Coverage]): CoverageDataset

48. #### implicit def featuresToCoverageDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Coverage]): CoverageDataset

49. #### implicit def featuresToFeaturesConversionFn(gDataset: FeatureDataset, rdd: RDD[Feature]): FeatureDataset

50. #### implicit def featuresToFragmentsConversionFn(gDataset: FeatureDataset, rdd: RDD[Fragment]): FragmentDataset

51. #### implicit def featuresToFragmentsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Fragment]): FragmentDataset

52. #### implicit def featuresToGenotypesConversionFn(gDataset: FeatureDataset, rdd: RDD[Genotype]): GenotypeDataset

53. #### implicit def featuresToGenotypesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Genotype]): GenotypeDataset

54. #### implicit def featuresToReadsConversionFn(gDataset: FeatureDataset, rdd: RDD[Read]): ReadDataset

55. #### implicit def featuresToReadsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Read]): ReadDataset

56. #### implicit def featuresToSequencesConversionFn(gDataset: FeatureDataset, rdd: RDD[Sequence]): SequenceDataset

57. #### implicit def featuresToSequencesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Sequence]): SequenceDataset

58. #### implicit def featuresToSlicesConversionFn(gDataset: FeatureDataset, rdd: RDD[Slice]): SliceDataset

59. #### implicit def featuresToSlicesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Slice]): SliceDataset

60. #### implicit def featuresToVariantContextConversionFn(gDataset: FeatureDataset, rdd: RDD[VariantContext]): VariantContextDataset

61. #### implicit def featuresToVariantsConversionFn(gDataset: FeatureDataset, rdd: RDD[Variant]): VariantDataset

62. #### implicit def featuresToVariantsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Variant]): VariantDataset

63. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

64. #### implicit def fragmentsToAlignmentRecordsConversionFn(gDataset: FragmentDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

65. #### implicit def fragmentsToAlignmentRecordsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

66. #### implicit def fragmentsToCoverageConversionFn(gDataset: FragmentDataset, rdd: RDD[Coverage]): CoverageDataset

67. #### implicit def fragmentsToCoverageDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Coverage]): CoverageDataset

68. #### implicit def fragmentsToFeaturesConversionFn(gDataset: FragmentDataset, rdd: RDD[Feature]): FeatureDataset

69. #### implicit def fragmentsToFeaturesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Feature]): FeatureDataset

70. #### implicit def fragmentsToFragmentsConversionFn(gDataset: FragmentDataset, rdd: RDD[Fragment]): FragmentDataset

71. #### implicit def fragmentsToGenotypesConversionFn(gDataset: FragmentDataset, rdd: RDD[Genotype]): GenotypeDataset

72. #### implicit def fragmentsToGenotypesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Genotype]): GenotypeDataset

73. #### implicit def fragmentsToReadsConversionFn(gDataset: FragmentDataset, rdd: RDD[Read]): ReadDataset

74. #### implicit def fragmentsToReadsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Read]): ReadDataset

75. #### implicit def fragmentsToSequencesConversionFn(gDataset: FragmentDataset, rdd: RDD[Sequence]): SequenceDataset

76. #### implicit def fragmentsToSequencesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Sequence]): SequenceDataset

77. #### implicit def fragmentsToSlicesConversionFn(gDataset: FragmentDataset, rdd: RDD[Slice]): SliceDataset

78. #### implicit def fragmentsToSlicesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Slice]): SliceDataset

79. #### implicit def fragmentsToVariantContextConversionFn(gDataset: FragmentDataset, rdd: RDD[VariantContext]): VariantContextDataset

80. #### implicit def fragmentsToVariantsConversionFn(gDataset: FragmentDataset, rdd: RDD[Variant]): VariantDataset

81. #### implicit def fragmentsToVariantsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Variant]): VariantDataset

82. #### implicit def genericToAlignmentRecordsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

83. #### implicit def genericToCoverageConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Coverage]): CoverageDataset

84. #### implicit def genericToFeatureConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Feature]): FeatureDataset

85. #### implicit def genericToFragmentsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Fragment]): FragmentDataset

86. #### implicit def genericToGenotypesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Genotype]): GenotypeDataset

87. #### implicit def genericToReadsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Read]): ReadDataset

88. #### implicit def genericToSequencesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Sequence]): SequenceDataset

89. #### implicit def genericToSlicesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Slice]): SliceDataset

90. #### implicit def genericToVariantContextsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[VariantContext]): VariantContextDataset

91. #### implicit def genericToVariantsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Variant]): VariantDataset

92. #### implicit def genotypesToAlignmentRecordsConversionFn(gDataset: GenotypeDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

93. #### implicit def genotypesToAlignmentRecordsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

94. #### implicit def genotypesToCoverageConversionFn(gDataset: GenotypeDataset, rdd: RDD[Coverage]): CoverageDataset

95. #### implicit def genotypesToCoverageDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Coverage]): CoverageDataset

96. #### implicit def genotypesToFeaturesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Feature]): FeatureDataset

97. #### implicit def genotypesToFeaturesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Feature]): FeatureDataset

98. #### implicit def genotypesToFragmentsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Fragment]): FragmentDataset

99. #### implicit def genotypesToFragmentsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Fragment]): FragmentDataset

100. #### implicit def genotypesToGenotypesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Genotype]): GenotypeDataset

101. #### implicit def genotypesToReadsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Read]): ReadDataset

102. #### implicit def genotypesToReadsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Read]): ReadDataset

103. #### implicit def genotypesToSequencesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Sequence]): SequenceDataset

104. #### implicit def genotypesToSequencesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Sequence]): SequenceDataset

105. #### implicit def genotypesToSlicesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Slice]): SliceDataset

106. #### implicit def genotypesToSlicesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Slice]): SliceDataset

107. #### implicit def genotypesToVariantContextConversionFn(gDataset: GenotypeDataset, rdd: RDD[VariantContext]): VariantContextDataset

108. #### implicit def genotypesToVariantsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Variant]): VariantDataset

109. #### implicit def genotypesToVariantsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Variant]): VariantDataset

110. #### final def getClass(): Class[_]

     Definition Classes
       AnyRef → Any

111. #### def hashCode(): Int

     Definition Classes
       AnyRef → Any

112. #### final def isInstanceOf[T0]: Boolean

     Definition Classes
       Any

113. #### final def ne(arg0: AnyRef): Boolean

     Definition Classes
       AnyRef

114. #### final def notify(): Unit

     Definition Classes
       AnyRef

115. #### final def notifyAll(): Unit

     Definition Classes
       AnyRef

116. #### implicit def readsToAlignmentRecordsConversionFn(gDataset: ReadDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

117. #### implicit def readsToAlignmentRecordsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

118. #### implicit def readsToCoverageConversionFn(gDataset: ReadDataset, rdd: RDD[Coverage]): CoverageDataset

119. #### implicit def readsToCoverageDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Coverage]): CoverageDataset

120. #### implicit def readsToFeaturesConversionFn(gDataset: ReadDataset, rdd: RDD[Feature]): FeatureDataset

121. #### implicit def readsToFeaturesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Feature]): FeatureDataset

122. #### implicit def readsToFragmentsConversionFn(gDataset: ReadDataset, rdd: RDD[Fragment]): FragmentDataset

123. #### implicit def readsToFragmentsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Fragment]): FragmentDataset

124. #### implicit def readsToGenotypesConversionFn(gDataset: ReadDataset, rdd: RDD[Genotype]): GenotypeDataset

125. #### implicit def readsToGenotypesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Genotype]): GenotypeDataset

126. #### implicit def readsToReadsConversionFn(gDataset: ReadDataset, rdd: RDD[Read]): ReadDataset

127. #### implicit def readsToSequencesConversionFn(gDataset: ReadDataset, rdd: RDD[Sequence]): SequenceDataset

128. #### implicit def readsToSequencesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Sequence]): SequenceDataset

129. #### implicit def readsToSlicesConversionFn(gDataset: ReadDataset, rdd: RDD[Slice]): SliceDataset

130. #### implicit def readsToSlicesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Slice]): SliceDataset

131. #### implicit def readsToVariantContextsConversionFn(gDataset: ReadDataset, rdd: RDD[VariantContext]): VariantContextDataset

132. #### implicit def readsToVariantsConversionFn(gDataset: ReadDataset, rdd: RDD[Variant]): VariantDataset

133. #### implicit def readsToVariantsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Variant]): VariantDataset

134. #### implicit def recordToRichRecord(record: AlignmentRecord): RichAlignmentRecord

135. #### implicit def sequencesToAlignmentRecordsConversionFn(gDataset: SequenceDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

136. #### implicit def sequencesToAlignmentRecordsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

137. #### implicit def sequencesToCoverageConversionFn(gDataset: SequenceDataset, rdd: RDD[Coverage]): CoverageDataset

138. #### implicit def sequencesToCoverageDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Coverage]): CoverageDataset

139. #### implicit def sequencesToFeaturesConversionFn(gDataset: SequenceDataset, rdd: RDD[Feature]): FeatureDataset

140. #### implicit def sequencesToFeaturesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Feature]): FeatureDataset

141. #### implicit def sequencesToFragmentsConversionFn(gDataset: SequenceDataset, rdd: RDD[Fragment]): FragmentDataset

142. #### implicit def sequencesToFragmentsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Fragment]): FragmentDataset

143. #### implicit def sequencesToGenotypesConversionFn(gDataset: SequenceDataset, rdd: RDD[Genotype]): GenotypeDataset

144. #### implicit def sequencesToGenotypesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Genotype]): GenotypeDataset

145. #### implicit def sequencesToReadsConversionFn(gDataset: SequenceDataset, rdd: RDD[Read]): ReadDataset

146. #### implicit def sequencesToReadsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Read]): ReadDataset

147. #### implicit def sequencesToSequencesConversionFn(gDataset: SequenceDataset, rdd: RDD[Sequence]): SequenceDataset

148. #### implicit def sequencesToSlicesConversionFn(gDataset: SequenceDataset, rdd: RDD[Slice]): SliceDataset

149. #### implicit def sequencesToSlicesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Slice]): SliceDataset

150. #### implicit def sequencesToVariantContextsConversionFn(gDataset: SequenceDataset, rdd: RDD[VariantContext]): VariantContextDataset

151. #### implicit def sequencesToVariantsConversionFn(gDataset: SequenceDataset, rdd: RDD[Variant]): VariantDataset

152. #### implicit def sequencesToVariantsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Variant]): VariantDataset

153. #### implicit def slicesToAlignmentRecordsConversionFn(gDataset: SliceDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

154. #### implicit def slicesToAlignmentRecordsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

155. #### implicit def slicesToCoverageConversionFn(gDataset: SliceDataset, rdd: RDD[Coverage]): CoverageDataset

156. #### implicit def slicesToCoverageDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Coverage]): CoverageDataset

157. #### implicit def slicesToFeaturesConversionFn(gDataset: SliceDataset, rdd: RDD[Feature]): FeatureDataset

158. #### implicit def slicesToFeaturesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Feature]): FeatureDataset

159. #### implicit def slicesToFragmentsConversionFn(gDataset: SliceDataset, rdd: RDD[Fragment]): FragmentDataset

160. #### implicit def slicesToFragmentsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Fragment]): FragmentDataset

161. #### implicit def slicesToGenotypesConversionFn(gDataset: SliceDataset, rdd: RDD[Genotype]): GenotypeDataset

162. #### implicit def slicesToGenotypesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Genotype]): GenotypeDataset

163. #### implicit def slicesToReadsConversionFn(gDataset: SliceDataset, rdd: RDD[Read]): ReadDataset

164. #### implicit def slicesToReadsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Read]): ReadDataset

165. #### implicit def slicesToSequencesConversionFn(gDataset: SliceDataset, rdd: RDD[Sequence]): SequenceDataset

166. #### implicit def slicesToSequencesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Sequence]): SequenceDataset

167. #### implicit def slicesToSlicesConversionFn(gDataset: SliceDataset, rdd: RDD[Slice]): SliceDataset

168. #### implicit def slicesToVariantContextsConversionFn(gDataset: SliceDataset, rdd: RDD[VariantContext]): VariantContextDataset

169. #### implicit def slicesToVariantsConversionFn(gDataset: SliceDataset, rdd: RDD[Variant]): VariantDataset

170. #### implicit def slicesToVariantsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Variant]): VariantDataset

171. #### implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext

172. #### final def synchronized[T0](arg0: ⇒ T0): T0

     Definition Classes
       AnyRef

173. #### def toString(): String

     Definition Classes
       AnyRef → Any

174. #### implicit def variantContextsToAlignmentRecordsConversionFn(gDataset: VariantContextDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

175. #### implicit def variantContextsToCoverageConversionFn(gDataset: VariantContextDataset, rdd: RDD[Coverage]): CoverageDataset

176. #### implicit def variantContextsToFeaturesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Feature]): FeatureDataset

177. #### implicit def variantContextsToFragmentsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Fragment]): FragmentDataset

178. #### implicit def variantContextsToGenotypesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Genotype]): GenotypeDataset

179. #### implicit def variantContextsToReadsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Read]): ReadDataset

180. #### implicit def variantContextsToSequencesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Sequence]): SequenceDataset

181. #### implicit def variantContextsToSlicesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Slice]): SliceDataset

182. #### implicit def variantContextsToVariantContextsConversionFn(gDataset: VariantContextDataset, rdd: RDD[VariantContext]): VariantContextDataset

183. #### implicit def variantContextsToVariantsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Variant]): VariantDataset

184. #### implicit def variantsToAlignmentRecordsConversionFn(gDataset: VariantDataset, rdd: RDD[AlignmentRecord]): AlignmentRecordDataset

185. #### implicit def variantsToAlignmentRecordsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[AlignmentRecord]): AlignmentRecordDataset

186. #### implicit def variantsToCoverageConversionFn(gDataset: VariantDataset, rdd: RDD[Coverage]): CoverageDataset

187. #### implicit def variantsToCoverageDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Coverage]): CoverageDataset

188. #### implicit def variantsToFeaturesConversionFn(gDataset: VariantDataset, rdd: RDD[Feature]): FeatureDataset

189. #### implicit def variantsToFeaturesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Feature]): FeatureDataset

190. #### implicit def variantsToFragmentsConversionFn(gDataset: VariantDataset, rdd: RDD[Fragment]): FragmentDataset

191. #### implicit def variantsToFragmentsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Fragment]): FragmentDataset

192. #### implicit def variantsToGenotypesConversionFn(gDataset: VariantDataset, rdd: RDD[Genotype]): GenotypeDataset

193. #### implicit def variantsToGenotypesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Genotype]): GenotypeDataset

194. #### implicit def variantsToReadsConversionFn(gDataset: VariantDataset, rdd: RDD[Read]): ReadDataset

195. #### implicit def variantsToReadsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Read]): ReadDataset

196. #### implicit def variantsToSequencesConversionFn(gDataset: VariantDataset, rdd: RDD[Sequence]): SequenceDataset

197. #### implicit def variantsToSequencesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Sequence]): SequenceDataset

198. #### implicit def variantsToSlicesConversionFn(gDataset: VariantDataset, rdd: RDD[Slice]): SliceDataset

199. #### implicit def variantsToSlicesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Slice]): SliceDataset

200. #### implicit def variantsToVariantContextConversionFn(gDataset: VariantDataset, rdd: RDD[VariantContext]): VariantContextDataset

201. #### implicit def variantsToVariantsConversionFn(gDataset: VariantDataset, rdd: RDD[Variant]): VariantDataset

202. #### final def wait(): Unit

     Definition Classes
       AnyRef
     Annotations
       @throws( ... )

203. #### final def wait(arg0: Long, arg1: Int): Unit

     Definition Classes
       AnyRef
     Annotations
       @throws( ... )

204. #### final def wait(arg0: Long): Unit

     Definition Classes
       AnyRef
     Annotations
       @throws( ... )

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped