Object/Class

org.bdgenomics.adam.rdd.sequence

SequenceDataset

Related Docs: class SequenceDataset | package sequence

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object SequenceDataset

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply(rdd: RDD[Sequence], sd: SequenceDictionary): SequenceDataset

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    Builds a SequenceDataset given a sequence dictionary.

    Builds a SequenceDataset given a sequence dictionary.

    rdd

    The underlying Sequence RDD to build from.

    sd

    The sequence dictionary for this SequenceDataset.

    returns

    Returns a new SequenceDataset.

  5. def apply(rdd: RDD[Sequence]): SequenceDataset

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    Builds a SequenceDataset with an empty sequence dictionary.

    Builds a SequenceDataset with an empty sequence dictionary.

    rdd

    The underlying Sequence RDD to build from.

    returns

    Returns a new SequenceDataset.

  6. def apply(ds: Dataset[Sequence], sequences: SequenceDictionary): SequenceDataset

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    A genomic dataset that wraps a dataset of Sequence data.

    A genomic dataset that wraps a dataset of Sequence data.

    ds

    A Dataset of sequences.

    sequences

    The reference genome these data are aligned to.

  7. def apply(ds: Dataset[Sequence]): SequenceDataset

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    A genomic dataset that wraps a dataset of Sequence data.

    A genomic dataset that wraps a dataset of Sequence data.

    ds

    A Dataset of sequences.

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  12. def finalize(): Unit

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