LeftOuterShuffleJoin
Timers
LeftOuterShuffleRegionJoin
rdd
LeftOuterShuffleRegionJoinAndGroupByLeft
rdd
LoadAlignments
Timers
LoadBam
Timers
LoadBed
Timers
LoadCoverage
Timers
LoadFasta
Timers
LoadFastaSequences
Timers
LoadFastaSlices
Timers
LoadFastq
Timers
LoadFeatures
Timers
LoadFragments
Timers
LoadGenotypes
Timers
LoadGff3
Timers
LoadGtf
Timers
LoadIndexedBam
Timers
LoadIndexedVcf
Timers
LoadInterleavedFastq
Timers
LoadInterleavedFastqFragments
Timers
LoadIntervalList
Timers
LoadNarrowPeak
Timers
LoadPairedFastq
Timers
LoadPairedFastqFragments
Timers
LoadParquet
Timers
LoadReferenceFile
Timers
LoadSequenceDictionary
Timers
LoadSequences
Timers
LoadSlices
Timers
LoadUnpairedFastq
Timers
LoadVariants
Timers
LoadVcf
Timers
label
Symbol
leftNormalizeIndels
AlignmentDataset
leftOuterShuffleRegionJoin
GenomicDataset
leftOuterShuffleRegionJoinAndGroupByLeft
GenomicDataset
leftRdd
FullOuterShuffleRegionJoin InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin LeftOuterShuffleRegionJoinAndGroupByLeft RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin
length
ReferenceRegion SequenceRecord ReadField ReferenceField SequenceField SliceField Read Reference Sequence Slice
library
ReadGroup ReadGroupField
loadAlignments
ADAMContext
loadBam
ADAMContext
loadBed
ADAMContext
loadCoverage
ADAMContext
loadDnaSequences
ADAMContext
loadFastaDna
ADAMContext
loadFastaProtein
ADAMContext
loadFastaRna
ADAMContext
loadFastq
ADAMContext
loadFeatures
ADAMContext
loadFragments
ADAMContext
loadGenotypes
ADAMContext
loadGff3
ADAMContext
loadGtf
ADAMContext
loadIndexedBam
ADAMContext
loadIndexedVcf
ADAMContext
loadInterleavedFastq
ADAMContext
loadInterleavedFastqAsFragments
ADAMContext
loadIntervalList
ADAMContext
loadNarrowPeak
ADAMContext
loadPairedFastq
ADAMContext
loadPairedFastqAsFragments
ADAMContext
loadParquet
ADAMContext
loadParquetAlignments
ADAMContext
loadParquetCoverage
ADAMContext
loadParquetFeatures
ADAMContext
loadParquetFragments
ADAMContext
loadParquetGenotypes
ADAMContext
loadParquetReads
ADAMContext
loadParquetSequences
ADAMContext
loadParquetSlices
ADAMContext
loadParquetVariantContexts
ADAMContext
loadParquetVariants
ADAMContext
loadPartitionedParquetAlignments
ADAMContext
loadPartitionedParquetFeatures
ADAMContext
loadPartitionedParquetGenotypes
ADAMContext
loadPartitionedParquetVariantContexts
ADAMContext
loadPartitionedParquetVariants
ADAMContext
loadProteinSequences
ADAMContext
loadReads
ADAMContext
loadReferenceFile
ADAMContext
loadRnaSequences
ADAMContext
loadSequenceDictionary
ADAMContext
loadSequences
ADAMContext
loadSlices
ADAMContext
loadUnpairedFastq
ADAMContext
loadVariantContexts
ADAMContext
loadVariants
ADAMContext
loadVcf
ADAMContext
loadVcfWithProjection
ADAMContext
logProbabilityToPhred
PhredUtils
low
QualityScoreBin
lowLevelFastqRead
FastqRecordReader