org.bdgenomics.adam.projections

# AlignmentField

###
Related Doc: package projections

#### object AlignmentField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited

1. AlignmentField
2. FieldEnumeration
3. Enumeration
4. Serializable
5. Serializable
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Type Members

1. #### class SchemaVal extends Val with FieldValue

   An enumerated field that is part of this schema.

   An enumerated field that is part of this schema.

   Definition Classes
     FieldEnumeration

2. #### class Val extends Value with Serializable

   Attributes
     protected
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()

3. #### abstract class Value extends Ordered[Value] with Serializable

   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()

4. #### class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

   Definition Classes
     Enumeration

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### final def SchemaValue: SchemaVal

   Attributes
     protected
   Definition Classes
     FieldEnumeration

5. #### final def Value(i: Int, name: String): Value

   Attributes
     protected
   Definition Classes
     Enumeration

6. #### final def Value(name: String): Value

   Attributes
     protected
   Definition Classes
     Enumeration

7. #### final def Value(i: Int): Value

   Attributes
     protected
   Definition Classes
     Enumeration

8. #### final def Value: Value

   Attributes
     protected
   Definition Classes
     Enumeration

9. #### final def apply(x: Int): Value

   Definition Classes
     Enumeration

10. #### final def asInstanceOf[T0]: T0

    Definition Classes
      Any

11. #### val attributes: SchemaVal

12. #### val basesTrimmedFromEnd: SchemaVal

13. #### val basesTrimmedFromStart: SchemaVal

14. #### val cigar: SchemaVal

15. #### def clone(): AnyRef

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

16. #### val duplicateRead: SchemaVal

17. #### val end: SchemaVal

18. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

19. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

20. #### val failedVendorQualityChecks: SchemaVal

21. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

22. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

23. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

24. #### val insertSize: SchemaVal

25. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

26. #### val mappingQuality: SchemaVal

27. #### val mateAlignmentStart: SchemaVal

28. #### val mateMapped: SchemaVal

29. #### val mateNegativeStrand: SchemaVal

30. #### val mateReferenceName: SchemaVal

31. #### final def maxId: Int

    Definition Classes
      Enumeration

32. #### val mismatchingPositions: SchemaVal

33. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

34. #### var nextId: Int

    Attributes
      protected
    Definition Classes
      Enumeration

35. #### var nextName: Iterator[String]

    Attributes
      protected
    Definition Classes
      Enumeration

36. #### final def notify(): Unit

    Definition Classes
      AnyRef

37. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

38. #### val originalCigar: SchemaVal

39. #### val originalQualityScores: SchemaVal

40. #### val originalStart: SchemaVal

41. #### val primaryAlignment: SchemaVal

42. #### val properPair: SchemaVal

43. #### val qualityScores: SchemaVal

44. #### val readGroupId: SchemaVal

45. #### val readGroupSampleId: SchemaVal

46. #### val readInFragment: SchemaVal

47. #### val readMapped: SchemaVal

48. #### val readName: SchemaVal

49. #### val readNegativeStrand: SchemaVal

50. #### val readPaired: SchemaVal

51. #### def readResolve(): AnyRef

    Attributes
      protected
    Definition Classes
      Enumeration

52. #### val recordSchema: Schema

    The schema that this enumeration represents.

    The schema that this enumeration represents.

    Definition Classes
      FieldEnumeration

53. #### val referenceName: SchemaVal

54. #### val secondaryAlignment: SchemaVal

55. #### val sequence: SchemaVal

56. #### val start: SchemaVal

57. #### val supplementaryAlignment: SchemaVal

58. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

59. #### def toString(): String

    Definition Classes
      Enumeration → AnyRef → Any

60. #### def values: ValueSet

    Definition Classes
      Enumeration

61. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

62. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

63. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

64. #### final def withName(s: String): Value

    Definition Classes
      Enumeration

### Inherited from FieldEnumeration

### Inherited from Enumeration

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped