org.bdgenomics.adam.rdd.variant

# VariantContextDataset

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Related Docs: class VariantContextDataset | package variant

#### object VariantContextDataset extends Serializable

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1. #### final def !=(arg0: Any): Boolean

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2. #### final def ##(): Int

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3. #### final def ==(arg0: Any): Boolean

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4. #### def apply(ds: Dataset[VariantContext], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

   Builds a VariantContextDataset from a Dataset.

   Builds a VariantContextDataset from a Dataset.

   ds

     The underlying VariantContext dataset.

   sequences

     The sequence dictionary for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

5. #### def apply(ds: Dataset[VariantContext], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

   Builds a VariantContextDataset from a Dataset.

   Builds a VariantContextDataset from a Dataset.

   ds

     The underlying VariantContext dataset.

   references

     The references for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

6. #### def apply(ds: Dataset[VariantContext]): VariantContextDataset

   Builds a VariantContextDataset from a Dataset.

   Builds a VariantContextDataset from a Dataset.

   ds

     The underlying VariantContext dataset.

   returns

     A new VariantContextDataset.

7. #### def apply(rdd: RDD[VariantContext], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantContextDataset

   Builds a VariantContextDataset from an RDD.

   Builds a VariantContextDataset from an RDD.

   rdd

     The underlying VariantContext RDD.

   sequences

     The sequence dictionary for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

8. #### def apply(rdd: RDD[VariantContext], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

   Builds a VariantContextDataset from an RDD.

   Builds a VariantContextDataset from an RDD.

   rdd

     The underlying VariantContext RDD.

   references

     The references for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

9. #### final def asInstanceOf[T0]: T0

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10. #### def clone(): AnyRef

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18. #### final def notify(): Unit

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19. #### final def notifyAll(): Unit

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21. #### def toString(): String

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