ADAM_2.12: Core 0.27.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package rdd
  Definition Classes
    adam
-  package read
  Definition Classes
    rdd
- ADAMBAMOutputFormat
- ADAMBAMOutputFormatHeaderLess
- ADAMCRAMOutputFormat
- ADAMCRAMOutputFormatHeaderLess
- ADAMSAMOutputFormat
- ADAMSAMOutputFormatHeaderLess
- AlignmentRecordDataset
- AnySAMInFormatter
- AnySAMInFormatterCompanion
- AnySAMOutFormatter
- BAMInFormatter
- DatasetBoundAlignmentRecordDataset
- FASTQInFormatter
- IncorrectMDTagException
- InstrumentedADAMBAMOutputFormat
- InstrumentedADAMBAMOutputFormatHeaderLess
- InstrumentedADAMCRAMOutputFormat
- InstrumentedADAMCRAMOutputFormatHeaderLess
- InstrumentedADAMSAMOutputFormat
- InstrumentedADAMSAMOutputFormatHeaderLess
- ParquetUnboundAlignmentRecordDataset
- QualityScoreBin
- RDDBoundAlignmentRecordDataset
- ReferencePositionPairSerializer
- SAMInFormatter
- SingleReadBucketSerializer

c

org.bdgenomics.adam.rdd.read

# InstrumentedADAMBAMOutputFormatHeaderLess 

###

#### class InstrumentedADAMBAMOutputFormatHeaderLess[K] extends InstrumentedOutputFormat[K, SAMRecordWritable]

Wrapper that adds instrumentation to the SAM output format.

K

  The key type. Keys are not written.

Linear Supertypes
InstrumentedOutputFormat[K, SAMRecordWritable], OutputFormat[K, SAMRecordWritable], AnyRef, Any
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Ordering

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2. By Inheritance

Inherited

1. InstrumentedADAMBAMOutputFormatHeaderLess
2. InstrumentedOutputFormat
3. OutputFormat
4. AnyRef
5. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new InstrumentedADAMBAMOutputFormatHeaderLess()

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def checkOutputSpecs(context: JobContext): Unit
   Definition Classes
     InstrumentedOutputFormat → OutputFormat
6.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
7.  val delegate: OutputFormat[K, SAMRecordWritable]
   Definition Classes
     InstrumentedOutputFormat
8.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
9.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
10.  def finalize(): Unit
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )
11.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
12.  def getOutputCommitter(context: TaskAttemptContext): OutputCommitter
    Definition Classes
      InstrumentedOutputFormat → OutputFormat
13.  def getRecordWriter(context: TaskAttemptContext): RecordWriter[K, SAMRecordWritable]
    Definition Classes
      InstrumentedOutputFormat → OutputFormat
14.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
15.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
16.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
17.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
18.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
19.  def outputFormatClass(): Class[_ <: OutputFormat[K, SAMRecordWritable]]
    Definition Classes
      InstrumentedADAMBAMOutputFormatHeaderLess → InstrumentedOutputFormat
20.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
21.  def timerName(): String
    Definition Classes
      InstrumentedADAMBAMOutputFormatHeaderLess → InstrumentedOutputFormat
22.  def toString(): String
    Definition Classes
      AnyRef → Any
23.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
24.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
25.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from InstrumentedOutputFormat[K, SAMRecordWritable]

### Inherited from OutputFormat[K, SAMRecordWritable]

### Inherited from AnyRef

### Inherited from Any

### Ungrouped