ADAM_2.12: APIs for Java, Python 0.27.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package api
  Definition Classes
    adam
-  package java
  Definition Classes
    api
- AlignmentRecordsToAlignmentRecordsConverter
- AlignmentRecordsToContigsConverter
- AlignmentRecordsToContigsDatasetConverter
- AlignmentRecordsToCoverageConverter
- AlignmentRecordsToCoverageDatasetConverter
- AlignmentRecordsToFeaturesConverter
- AlignmentRecordsToFeaturesDatasetConverter
- AlignmentRecordsToFragmentsConverter
- AlignmentRecordsToFragmentsDatasetConverter
- AlignmentRecordsToGenotypesConverter
- AlignmentRecordsToGenotypesDatasetConverter
- AlignmentRecordsToVariantContextConverter
- AlignmentRecordsToVariantsConverter
- AlignmentRecordsToVariantsDatasetConverter
- ContigsToAlignmentRecordsConverter
- ContigsToAlignmentRecordsDatasetConverter
- ContigsToContigsConverter
- ContigsToCoverageConverter
- ContigsToCoverageDatasetConverter
- ContigsToFeaturesConverter
- ContigsToFeaturesDatasetConverter
- ContigsToFragmentsConverter
- ContigsToFragmentsDatasetConverter
- ContigsToGenotypesConverter
- ContigsToGenotypesDatasetConverter
- ContigsToVariantContextsConverter
- ContigsToVariantsConverter
- ContigsToVariantsDatasetConverter
- CoverageToAlignmentRecordsConverter
- CoverageToAlignmentRecordsDatasetConverter
- CoverageToContigsConverter
- CoverageToContigsDatasetConverter
- CoverageToCoverageConverter
- CoverageToFeaturesConverter
- CoverageToFeaturesDatasetConverter
- CoverageToFragmentsConverter
- CoverageToFragmentsDatasetConverter
- CoverageToGenotypesConverter
- CoverageToGenotypesDatasetConverter
- CoverageToVariantContextConverter
- CoverageToVariantsConverter
- CoverageToVariantsDatasetConverter
- FeaturesToAlignmentRecordsConverter
- FeaturesToAlignmentRecordsDatasetConverter
- FeaturesToContigsConverter
- FeaturesToContigsDatasetConverter
- FeaturesToCoverageConverter
- FeaturesToCoverageDatasetConverter
- FeaturesToFeatureConverter
- FeaturesToFragmentsConverter
- FeaturesToFragmentsDatasetConverter
- FeaturesToGenotypesConverter
- FeaturesToGenotypesDatasetConverter
- FeaturesToVariantContextConverter
- FeaturesToVariantsConverter
- FeaturesToVariantsDatasetConverter
- FragmentsToAlignmentRecordsConverter
- FragmentsToAlignmentRecordsDatasetConverter
- FragmentsToContigsConverter
- FragmentsToContigsDatasetConverter
- FragmentsToCoverageConverter
- FragmentsToCoverageDatasetConverter
- FragmentsToFeaturesConverter
- FragmentsToFeaturesDatasetConverter
- FragmentsToFragmentsConverter
- FragmentsToGenotypesConverter
- FragmentsToGenotypesDatasetConverter
- FragmentsToVariantContextConverter
- FragmentsToVariantsConverter
- FragmentsToVariantsDatasetConverter
- GenotypesToAlignmentRecordsConverter
- GenotypesToAlignmentRecordsDatasetConverter
- GenotypesToContigsConverter
- GenotypesToContigsDatasetConverter
- GenotypesToCoverageConverter
- GenotypesToCoverageDatasetConverter
- GenotypesToFeaturesConverter
- GenotypesToFeaturesDatasetConverter
- GenotypesToFragmentsConverter
- GenotypesToFragmentsDatasetConverter
- GenotypesToGenotypesConverter
- GenotypesToVariantContextConverter
- GenotypesToVariantsConverter
- GenotypesToVariantsDatasetConverter
- JavaADAMContext
- ToAlignmentRecordDatasetConversion
- ToContigDatasetConversion
- ToCoverageDatasetConversion
- ToFeatureDatasetConversion
- ToFragmentDatasetConversion
- ToGenotypeDatasetConversion
- ToVariantContextDatasetConversion
- ToVariantDatasetConversion
- VariantContextsToAlignmentRecordsConverter
- VariantContextsToContigsConverter
- VariantContextsToCoverageConverter
- VariantContextsToFeaturesConverter
- VariantContextsToFragmentsConverter
- VariantContextsToGenotypesConverter
- VariantContextsToVariantContextConverter
- VariantContextsToVariantsConverter
- VariantsToAlignmentRecordsConverter
- VariantsToAlignmentRecordsDatasetConverter
- VariantsToContigsConverter
- VariantsToContigsDatasetConverter
- VariantsToCoverageConverter
- VariantsToCoverageDatasetConverter
- VariantsToFeaturesConverter
- VariantsToFeaturesDatasetConverter
- VariantsToFragmentsConverter
- VariantsToFragmentsDatasetConverter
- VariantsToGenotypesConverter
- VariantsToGenotypesDatasetConverter
- VariantsToVariantContextConverter
- VariantsToVariantsConverter

c

org.bdgenomics.adam.api.java

# VariantContextsToGenotypesConverter 

###

#### final class VariantContextsToGenotypesConverter extends Function2[VariantContextDataset, RDD[Genotype], GenotypeDataset]

Linear Supertypes
Function2[VariantContextDataset, RDD[Genotype], GenotypeDataset], Serializable, AnyRef, Any
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Inherited

1. VariantContextsToGenotypesConverter
2. Function2
3. Serializable
4. AnyRef
5. Any

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Visibility

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### Instance Constructors

1.  new VariantContextsToGenotypesConverter()

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def call(v1: VariantContextDataset, v2: RDD[Genotype]): GenotypeDataset
   Definition Classes
     VariantContextsToGenotypesConverter → Function2
6.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
9.  def finalize(): Unit
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )
10.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
11.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
12.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
13.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
14.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
15.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
16.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
17.  def toString(): String
    Definition Classes
      AnyRef → Any
18.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
19.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
20.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from Function2[VariantContextDataset, RDD[Genotype], GenotypeDataset]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped