ADAM_2.12: Core 0.27.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package models
  Definition Classes
    adam
- Alphabet
- Attribute
- Coverage
- DNAAlphabet
- MdTag
- MdTagEvent
- OptionalPositionOrdering
- OptionalReferenceOrdering
- OptionalRegionOrdering
- PositionOrdering
- ReadGroup
- ReadGroupDictionary
- ReferenceOrdering
- ReferencePosition
- ReferencePositionSerializer
- ReferenceRegion
- ReferenceRegionSerializer
- RegionOrdering
- SequenceDictionary
- SequenceRecord
- SnpTable
- Symbol
- TagType
- VariantContext
- VariantContextSerializer

o

org.bdgenomics.adam.models

# ReadGroup 

###
Companion class ReadGroup

#### object ReadGroup extends Serializable

Singleton object for creating ReaGroups.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
 
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. ReadGroup
2. Serializable
3. Serializable
4. AnyRef
5. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def apply(samRGR: SAMReadGroupRecord): ReadGroup

   Converts a SAMReadGroupRecord into a ReadGroup.

   Converts a SAMReadGroupRecord into a ReadGroup.

   samRGR

     SAMReadGroupRecord to convert.

   returns

     Returns an equivalent ADAM format read group.

5.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
6.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
9.  def finalize(): Unit
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )
10.  def fromAvro(readGroup: formats.avro.ReadGroup): ReadGroup

    Converts the Avro ReadGroup record into a model ReadGroup.

    Converts the Avro ReadGroup record into a model ReadGroup.

    Although the ReadGroup class is serializable, when saving the record to disk, we want to save it as Avro. This method allows us to go from the Avro format which we use on disk into the class we use in memory.

    readGroup

      ReadGroup record loaded from disk.

    returns

      Avro record converted into ReadGroup representation.

11.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
12.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
13.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
14.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
15.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
16.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
17.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
18.  def toString(): String
    Definition Classes
      AnyRef → Any
19.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
20.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
21.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped