ADAM_2.12: CLI 0.27.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package cli
  Definition Classes
    adam
- ADAM2Fasta
- ADAM2FastaArgs
- ADAM2Fastq
- ADAM2FastqArgs
- ADAMMain
- ADAMModule
- About
- CommandGroup
- CountContigKmers
- CountContigKmersArgs
- CountReadKmers
- CountReadKmersArgs
- Fasta2ADAM
- Fasta2ADAMArgs
- FlagStat
- FlagStatArgs
- MergeShards
- MergeShardsArgs
- PrintADAM
- PrintADAMArgs
- Reads2Coverage
- Reads2CoverageArgs
- TransformAlignments
- TransformAlignmentsArgs
- TransformFeatures
- TransformFeaturesArgs
- TransformFragments
- TransformFragmentsArgs
- TransformGenotypes
- TransformGenotypesArgs
- TransformVariants
- TransformVariantsArgs
- View
- ViewArgs

c

org.bdgenomics.adam.cli

# ADAMModule 

###

#### class ADAMModule extends AbstractModule with ScalaModule

Linear Supertypes
ScalaModule, InternalModule[Binder], AbstractModule, Module, AnyRef, Any
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Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. ADAMModule
2. ScalaModule
3. InternalModule
4. AbstractModule
5. Module
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new ADAMModule()

### Type Members

1.  class BindingBuilder[T] extends ScalaAnnotatedBindingBuilder[T]
   Definition Classes
     InternalModule

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def addError(arg0: Message): Unit
   Attributes
     protected[com.google.inject]
   Definition Classes
     AbstractModule
5.  def addError(arg0: Throwable): Unit
   Attributes
     protected[com.google.inject]
   Definition Classes
     AbstractModule
6.  def addError(arg0: String, arg1: <repeated...>[AnyRef]): Unit
   Attributes
     protected[com.google.inject]
   Definition Classes
     AbstractModule
   Annotations
     @transient()
7.  def annotatedWith[A <: Annotation](implicit arg0: Manifest[A]): Matcher[AnnotatedElement]
   Attributes
     protected[this]
   Definition Classes
     InternalModule
8.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
9.  def bind[T](implicit arg0: Manifest[T]): BindingBuilder[T]
   Attributes
     protected[this]
   Definition Classes
     InternalModule
10.  def bind[T](arg0: Class[T]): AnnotatedBindingBuilder[T]
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
11.  def bind[T](arg0: TypeLiteral[T]): AnnotatedBindingBuilder[T]
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
12.  def bind[T](arg0: Key[T]): LinkedBindingBuilder[T]
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
13.  def bindConstant(): AnnotatedConstantBindingBuilder
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
14.  def bindInterceptor[I <: MethodInterceptor](classMatcher: Matcher[_ >: Class[_]], methodMatcher: Matcher[_ >: AnnotatedElement])(implicit arg0: Manifest[I]): Unit
    Attributes
      protected[this]
    Definition Classes
      InternalModule
15.  def bindInterceptor(arg0: Matcher[_ >: Class[_]], arg1: Matcher[_ >: Method], arg2: <repeated...>[MethodInterceptor]): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
    Annotations
      @transient()
16.  def bindListener(arg0: Matcher[_ >: Binding[_]], arg1: <repeated...>[ProvisionListener]): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
    Annotations
      @transient()
17.  def bindListener(arg0: Matcher[_ >: TypeLiteral[_]], arg1: TypeListener): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
18.  def bindScope[T <: Annotation](scope: Scope)(implicit arg0: Manifest[T]): Unit
    Attributes
      protected[this]
    Definition Classes
      InternalModule
19.  def bindScope(arg0: Class[_ <: Annotation], arg1: Scope): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
20.  def binder(): Binder
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
21.  def binderAccess: Binder
    Attributes
      protected[this]
    Definition Classes
      ScalaModule → InternalModule
22.  def clone(): AnyRef
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )
23.  def configure(): Unit
    Definition Classes
      ADAMModule → AbstractModule
24.  final def configure(arg0: Binder): Unit
    Definition Classes
      AbstractModule → Module
25.  def convertToTypes(arg0: Matcher[_ >: TypeLiteral[_]], arg1: TypeConverter): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
26.  def currentStage(): Stage
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
27.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
28.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
29.  def finalize(): Unit
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )
30.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
31.  def getMembersInjector[T](implicit arg0: Manifest[T]): MembersInjector[T]
    Attributes
      protected[this]
    Definition Classes
      InternalModule
32.  def getMembersInjector[T](arg0: TypeLiteral[T]): MembersInjector[T]
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
33.  def getMembersInjector[T](arg0: Class[T]): MembersInjector[T]
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
34.  def getProvider[T](implicit arg0: Manifest[T]): Provider[T]
    Attributes
      protected[this]
    Definition Classes
      InternalModule
35.  def getProvider[T](arg0: Class[T]): Provider[T]
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
36.  def getProvider[T](arg0: Key[T]): Provider[T]
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
37.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
38.  def install(arg0: Module): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
39.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
40.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
41.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
42.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
43.  def requestInjection(arg0: Any): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
44.  def requestStaticInjection[T]()(implicit arg0: Manifest[T]): Unit
    Attributes
      protected[this]
    Definition Classes
      InternalModule
45.  def requestStaticInjection(arg0: <repeated...>[Class[_]]): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
    Annotations
      @transient()
46.  def requireBinding(arg0: Class[_]): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
47.  def requireBinding(arg0: Key[_]): Unit
    Attributes
      protected[com.google.inject]
    Definition Classes
      AbstractModule
48.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
49.  def toString(): String
    Definition Classes
      AnyRef → Any
50.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
51.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
52.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from ScalaModule

### Inherited from InternalModule[Binder]

### Inherited from AbstractModule

### Inherited from Module

### Inherited from AnyRef

### Inherited from Any

### Ungrouped