ADAM_2.12: Core 0.29.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package projections
  Definition Classes
    adam
- AlignmentRecordField
- DbxrefField
- FeatureField
- FieldEnumeration
- FieldValue
- Filter
- FragmentField
- GenotypeField
- OntologyTermField
- Projection
- ReadField
- ReadGroupField
- ReferenceField
- SampleField
- SequenceField
- SliceField
- TranscriptEffectField
- VariantAnnotationField
- VariantCallingAnnotationsField
- VariantField

o

org.bdgenomics.adam.projections

# TranscriptEffectField 

###

#### object TranscriptEffectField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
 
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. TranscriptEffectField
2. FieldEnumeration
3. Enumeration
4. Serializable
5. Serializable
6. AnyRef
7. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Type Members

1.  class SchemaVal extends Val with FieldValue

   An enumerated field that is part of this schema.

   An enumerated field that is part of this schema.

   Definition Classes
     FieldEnumeration
2.  class Val extends Value with Serializable
   Attributes
     protected
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
3.  abstract class Value extends Ordered[Value] with Serializable
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
4.  class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable
   Definition Classes
     Enumeration

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def SchemaValue: SchemaVal
   Attributes
     protected
   Definition Classes
     FieldEnumeration
5.  final def Value(i: Int, name: String): Value
   Attributes
     protected
   Definition Classes
     Enumeration
6.  final def Value(name: String): Value
   Attributes
     protected
   Definition Classes
     Enumeration
7.  final def Value(i: Int): Value
   Attributes
     protected
   Definition Classes
     Enumeration
8.  final def Value: Value
   Attributes
     protected
   Definition Classes
     Enumeration
9.  val alternateAllele: SchemaVal
10.  final def apply(x: Int): Value
    Definition Classes
      Enumeration
11.  final def asInstanceOf[T0]: T0
    Definition Classes
      Any
12.  val biotype: SchemaVal
13.  val cdnaLength: SchemaVal
14.  val cdnaPosition: SchemaVal
15.  val cdsLength: SchemaVal
16.  val cdsPosition: SchemaVal
17.  def clone(): AnyRef
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )
18.  val distance: SchemaVal
19.  val effects: SchemaVal
20.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
21.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
22.  val featureId: SchemaVal
23.  val featureType: SchemaVal
24.  def finalize(): Unit
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )
25.  val geneId: SchemaVal
26.  val geneName: SchemaVal
27.  val genomicHgvs: SchemaVal
28.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
29.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
30.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
31.  final def maxId: Int
    Definition Classes
      Enumeration
32.  val messages: SchemaVal
33.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
34.  var nextId: Int
    Attributes
      protected
    Definition Classes
      Enumeration
35.  var nextName: Iterator[String]
    Attributes
      protected
    Definition Classes
      Enumeration
36.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
37.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
38.  val proteinHgvs: SchemaVal
39.  val proteinLength: SchemaVal
40.  val proteinPosition: SchemaVal
41.  val rank: SchemaVal
42.  def readResolve(): AnyRef
    Attributes
      protected
    Definition Classes
      Enumeration
43.  val recordSchema: Schema
    Definition Classes
      FieldEnumeration
44.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
45.  def toString(): String
    Definition Classes
      Enumeration → AnyRef → Any
46.  val total: SchemaVal
47.  val transcriptHgvs: SchemaVal
48.  def values: ValueSet
    Definition Classes
      Enumeration
49.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
50.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
51.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )
52.  final def withName(s: String): Value
    Definition Classes
      Enumeration

### Inherited from FieldEnumeration

### Inherited from Enumeration

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped