ADAM_2.12: Core 0.29.0 API < Back
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# Packages

-  package root
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    root
-  package org
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    root
-  package bdgenomics
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    org
-  package adam
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    bdgenomics
-  package rdd
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    adam
-  package variant
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    rdd
- ADAMVCFOutputFormat
- DatasetBoundGenotypeDataset
- DatasetBoundVariantContextDataset
- DatasetBoundVariantDataset
- GenotypeDataset
- ParquetUnboundGenotypeDataset
- ParquetUnboundVariantDataset
- RDDBoundGenotypeDataset
- RDDBoundVariantContextDataset
- RDDBoundVariantDataset
- VCFInFormatter
- VCFOutFormatter
- VariantContextDataset
- VariantDataset

o

org.bdgenomics.adam.rdd.variant

# VariantDataset 

###
Companion class VariantDataset

#### object VariantDataset extends Serializable

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Serializable, Serializable, AnyRef, Any
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1.  final def !=(arg0: Any): Boolean
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2.  final def ##(): Int
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3.  final def ==(arg0: Any): Boolean
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4.  def apply(ds: Dataset[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine]): VariantDataset

   An dataset containing variants called against a given reference genome.

   An dataset containing variants called against a given reference genome.

   ds

     Variants.

   sequences

     A dictionary describing the reference genome.

   headerLines

     The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of Variants.

5.  def apply(ds: Dataset[Variant]): VariantDataset

   An dataset containing variants called against a given reference genome.

   An dataset containing variants called against a given reference genome.

   ds

     Variants.

6.  def apply(rdd: RDD[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantDataset

   Builds a VariantDataset without a partition map.

   Builds a VariantDataset without a partition map.

   rdd

     The underlying Variant RDD.

   sequences

     The sequence dictionary for the RDD.

   headerLines

     The header lines for the RDD.

   returns

     A new Variant RDD.

7.  final def asInstanceOf[T0]: T0
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