ADAM_2.12: Core 0.29.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package sql
  Definition Classes
    adam
- AlignmentRecord
- Dbxref
- Feature
- Fragment
- Genotype
- OntologyTerm
- ProcessingStep
- Read
- Reference
- Sequence
- Slice
- TranscriptEffect
- Variant
- VariantAnnotation
- VariantCallingAnnotations
- VariantContext

c

org.bdgenomics.adam.sql

# Sequence 

###
Companion object Sequence

#### case class Sequence(name: Option[String] = None, description: Option[String] = None, alphabet: Option[String] = None, sequence: Option[String] = None, length: Option[Long] = None, attributes: Map[String, String] = Map()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. Sequence
2. Serializable
3. Serializable
4. Product
5. Equals
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new Sequence(name: Option[String] = None, description: Option[String] = None, alphabet: Option[String] = None, sequence: Option[String] = None, length: Option[Long] = None, attributes: Map[String, String] = Map())

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  val alphabet: Option[String]
5.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
6.  val attributes: Map[String, String]
7.  def canEqual(that: Any): Boolean
   Definition Classes
     Sequence → Equals
8.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
9.  val description: Option[String]
10.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
11.  def finalize(): Unit
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )
12.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
13.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
14.  val length: Option[Long]
15.  val name: Option[String]
16.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
17.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
18.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
19.  def productArity: Int
    Definition Classes
      Sequence → Product
20.  def productElement(i: Int): Any
    Definition Classes
      Sequence → Product
21.  val sequence: Option[String]
22.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
23.  def toAvro: formats.avro.Sequence
24.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
25.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
26.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from AnyRef

### Inherited from Any

### Ungrouped