ADAM_2.12: Core 0.29.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package sql
  Definition Classes
    adam
- AlignmentRecord
- Dbxref
- Feature
- Fragment
- Genotype
- OntologyTerm
- ProcessingStep
- Read
- Reference
- Sequence
- Slice
- TranscriptEffect
- Variant
- VariantAnnotation
- VariantCallingAnnotations
- VariantContext

c

org.bdgenomics.adam.sql

# Slice 

###
Companion object Slice

#### case class Slice(name: Option[String] = None, description: Option[String] = None, alphabet: Option[String] = None, sequence: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, strand: Option[String] = None, length: Option[Long] = None, totalLength: Option[Long] = None, index: Option[Int] = None, slices: Option[Int] = None, attributes: Map[String, String] = Map()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Ordering

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2. By Inheritance

Inherited

1. Slice
2. Serializable
3. Serializable
4. Product
5. Equals
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new Slice(name: Option[String] = None, description: Option[String] = None, alphabet: Option[String] = None, sequence: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, strand: Option[String] = None, length: Option[Long] = None, totalLength: Option[Long] = None, index: Option[Int] = None, slices: Option[Int] = None, attributes: Map[String, String] = Map())

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  val alphabet: Option[String]
5.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
6.  val attributes: Map[String, String]
7.  def canEqual(that: Any): Boolean
   Definition Classes
     Slice → Equals
8.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
9.  val description: Option[String]
10.  val end: Option[Long]
11.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
12.  def finalize(): Unit
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )
13.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
14.  val index: Option[Int]
15.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
16.  val length: Option[Long]
17.  val name: Option[String]
18.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
19.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
20.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
21.  def productArity: Int
    Definition Classes
      Slice → Product
22.  def productElement(i: Int): Any
    Definition Classes
      Slice → Product
23.  val sequence: Option[String]
24.  val slices: Option[Int]
25.  val start: Option[Long]
26.  val strand: Option[String]
27.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
28.  def toAvro: formats.avro.Slice
29.  val totalLength: Option[Long]
30.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
31.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
32.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from AnyRef

### Inherited from Any

### Ungrouped