ADAM_2.12: APIs for Java, Python 0.29.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package api
  Definition Classes
    adam
-  package java
  Definition Classes
    api
- AlignmentRecordsToAlignmentRecordsConverter
- AlignmentRecordsToCoverageConverter
- AlignmentRecordsToCoverageDatasetConverter
- AlignmentRecordsToFeaturesConverter
- AlignmentRecordsToFeaturesDatasetConverter
- AlignmentRecordsToFragmentsConverter
- AlignmentRecordsToFragmentsDatasetConverter
- AlignmentRecordsToGenotypesConverter
- AlignmentRecordsToGenotypesDatasetConverter
- AlignmentRecordsToReadsConverter
- AlignmentRecordsToReadsDatasetConverter
- AlignmentRecordsToSequencesConverter
- AlignmentRecordsToSequencesDatasetConverter
- AlignmentRecordsToSlicesConverter
- AlignmentRecordsToSlicesDatasetConverter
- AlignmentRecordsToVariantContextConverter
- AlignmentRecordsToVariantsConverter
- AlignmentRecordsToVariantsDatasetConverter
- CoverageToAlignmentRecordsConverter
- CoverageToAlignmentRecordsDatasetConverter
- CoverageToCoverageConverter
- CoverageToFeaturesConverter
- CoverageToFeaturesDatasetConverter
- CoverageToFragmentsConverter
- CoverageToFragmentsDatasetConverter
- CoverageToGenotypesConverter
- CoverageToGenotypesDatasetConverter
- CoverageToReadsConverter
- CoverageToReadsDatasetConverter
- CoverageToSequencesConverter
- CoverageToSequencesDatasetConverter
- CoverageToSlicesConverter
- CoverageToSlicesDatasetConverter
- CoverageToVariantContextConverter
- CoverageToVariantsConverter
- CoverageToVariantsDatasetConverter
- FeaturesToAlignmentRecordsConverter
- FeaturesToAlignmentRecordsDatasetConverter
- FeaturesToCoverageConverter
- FeaturesToCoverageDatasetConverter
- FeaturesToFeatureConverter
- FeaturesToFragmentsConverter
- FeaturesToFragmentsDatasetConverter
- FeaturesToGenotypesConverter
- FeaturesToGenotypesDatasetConverter
- FeaturesToReadsConverter
- FeaturesToReadsDatasetConverter
- FeaturesToSequencesConverter
- FeaturesToSequencesDatasetConverter
- FeaturesToSlicesConverter
- FeaturesToSlicesDatasetConverter
- FeaturesToVariantContextConverter
- FeaturesToVariantsConverter
- FeaturesToVariantsDatasetConverter
- FragmentsToAlignmentRecordsConverter
- FragmentsToAlignmentRecordsDatasetConverter
- FragmentsToCoverageConverter
- FragmentsToCoverageDatasetConverter
- FragmentsToFeaturesConverter
- FragmentsToFeaturesDatasetConverter
- FragmentsToFragmentsConverter
- FragmentsToGenotypesConverter
- FragmentsToGenotypesDatasetConverter
- FragmentsToReadsConverter
- FragmentsToReadsDatasetConverter
- FragmentsToSequencesConverter
- FragmentsToSequencesDatasetConverter
- FragmentsToSlicesConverter
- FragmentsToSlicesDatasetConverter
- FragmentsToVariantContextConverter
- FragmentsToVariantsConverter
- FragmentsToVariantsDatasetConverter
- GenotypesToAlignmentRecordsConverter
- GenotypesToAlignmentRecordsDatasetConverter
- GenotypesToCoverageConverter
- GenotypesToCoverageDatasetConverter
- GenotypesToFeaturesConverter
- GenotypesToFeaturesDatasetConverter
- GenotypesToFragmentsConverter
- GenotypesToFragmentsDatasetConverter
- GenotypesToGenotypesConverter
- GenotypesToReadsConverter
- GenotypesToReadsDatasetConverter
- GenotypesToSequencesConverter
- GenotypesToSequencesDatasetConverter
- GenotypesToSlicesConverter
- GenotypesToSlicesDatasetConverter
- GenotypesToVariantContextConverter
- GenotypesToVariantsConverter
- GenotypesToVariantsDatasetConverter
- JavaADAMContext
- ReadsToAlignmentRecordsConverter
- ReadsToAlignmentRecordsDatasetConverter
- ReadsToCoverageConverter
- ReadsToCoverageDatasetConverter
- ReadsToFeaturesConverter
- ReadsToFeaturesDatasetConverter
- ReadsToFragmentsConverter
- ReadsToFragmentsDatasetConverter
- ReadsToGenotypesConverter
- ReadsToGenotypesDatasetConverter
- ReadsToReadsConverter
- ReadsToSequencesConverter
- ReadsToSequencesDatasetConverter
- ReadsToSlicesConverter
- ReadsToSlicesDatasetConverter
- ReadsToVariantContextsConverter
- ReadsToVariantsConverter
- ReadsToVariantsDatasetConverter
- SequencesToAlignmentRecordsConverter
- SequencesToAlignmentRecordsDatasetConverter
- SequencesToCoverageConverter
- SequencesToCoverageDatasetConverter
- SequencesToFeaturesConverter
- SequencesToFeaturesDatasetConverter
- SequencesToFragmentsConverter
- SequencesToFragmentsDatasetConverter
- SequencesToGenotypesConverter
- SequencesToGenotypesDatasetConverter
- SequencesToReadsConverter
- SequencesToReadsDatasetConverter
- SequencesToSequencesConverter
- SequencesToSlicesConverter
- SequencesToSlicesDatasetConverter
- SequencesToVariantContextsConverter
- SequencesToVariantsConverter
- SequencesToVariantsDatasetConverter
- SlicesToAlignmentRecordsConverter
- SlicesToAlignmentRecordsDatasetConverter
- SlicesToCoverageConverter
- SlicesToCoverageDatasetConverter
- SlicesToFeaturesConverter
- SlicesToFeaturesDatasetConverter
- SlicesToFragmentsConverter
- SlicesToFragmentsDatasetConverter
- SlicesToGenotypesConverter
- SlicesToGenotypesDatasetConverter
- SlicesToReadsConverter
- SlicesToReadsDatasetConverter
- SlicesToSequencesConverter
- SlicesToSequencesDatasetConverter
- SlicesToSlicesConverter
- SlicesToVariantContextsConverter
- SlicesToVariantsConverter
- SlicesToVariantsDatasetConverter
- ToAlignmentRecordDatasetConversion
- ToCoverageDatasetConversion
- ToFeatureDatasetConversion
- ToFragmentDatasetConversion
- ToGenotypeDatasetConversion
- ToReadDatasetConversion
- ToSequenceDatasetConversion
- ToSliceDatasetConversion
- ToVariantContextDatasetConversion
- ToVariantDatasetConversion
- VariantContextsToAlignmentRecordsConverter
- VariantContextsToCoverageConverter
- VariantContextsToFeaturesConverter
- VariantContextsToFragmentsConverter
- VariantContextsToGenotypesConverter
- VariantContextsToReadsConverter
- VariantContextsToSequencesConverter
- VariantContextsToSlicesConverter
- VariantContextsToVariantContextConverter
- VariantContextsToVariantsConverter
- VariantsToAlignmentRecordsConverter
- VariantsToAlignmentRecordsDatasetConverter
- VariantsToCoverageConverter
- VariantsToCoverageDatasetConverter
- VariantsToFeaturesConverter
- VariantsToFeaturesDatasetConverter
- VariantsToFragmentsConverter
- VariantsToFragmentsDatasetConverter
- VariantsToGenotypesConverter
- VariantsToGenotypesDatasetConverter
- VariantsToReadsConverter
- VariantsToReadsDatasetConverter
- VariantsToSequencesConverter
- VariantsToSequencesDatasetConverter
- VariantsToSlicesConverter
- VariantsToSlicesDatasetConverter
- VariantsToVariantContextConverter
- VariantsToVariantsConverter

c

org.bdgenomics.adam.api.java

# FragmentsToVariantsDatasetConverter 

###

#### final class FragmentsToVariantsDatasetConverter extends ToVariantDatasetConversion[Fragment, Fragment, FragmentDataset]

Linear Supertypes
ToVariantDatasetConversion[Fragment, Fragment, FragmentDataset], GenomicDatasetConversion[Fragment, Fragment, FragmentDataset, Variant, Variant, VariantDataset], Function2[FragmentDataset, Dataset[Variant], VariantDataset], Serializable, AnyRef, Any
 
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. FragmentsToVariantsDatasetConverter
2. ToVariantDatasetConversion
3. GenomicDatasetConversion
4. Function2
5. Serializable
6. AnyRef
7. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Instance Constructors

1.  new FragmentsToVariantsDatasetConverter()

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def call(v1: FragmentDataset, v2: Dataset[Variant]): VariantDataset
   Definition Classes
     FragmentsToVariantsDatasetConverter → GenomicDatasetConversion → Function2
6.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
9.  def finalize(): Unit
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )
10.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
11.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
12.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
13.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
14.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
15.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
16.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
17.  def toString(): String
    Definition Classes
      AnyRef → Any
18.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
19.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
20.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )
21.  val yTag: scala.reflect.api.JavaUniverse.TypeTag[Variant]
    Definition Classes
      ToVariantDatasetConversion → GenomicDatasetConversion

### Inherited from ToVariantDatasetConversion[Fragment, Fragment, FragmentDataset]

### Inherited from GenomicDatasetConversion[Fragment, Fragment, FragmentDataset, Variant, Variant, VariantDataset]

### Inherited from Function2[FragmentDataset, Dataset[Variant], VariantDataset]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped