ADAM_2.12: Core 0.30.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package rdd
  Definition Classes
    adam
-  package feature
  Definition Classes
    rdd
-  package fragment
  Definition Classes
    rdd
-  package read
  Definition Classes
    rdd
-  package sequence
  Definition Classes
    rdd
-  package variant
  Definition Classes
    rdd
- ADAMContext
- ADAMSaveAnyArgs
- AvroGenomicDataset
- AvroReadGroupGenomicDataset
- DatasetBoundGenericGenomicDataset
- DatasetBoundGenomicDataset
- FullOuterShuffleRegionJoin
- GenericConverter
- GenericGenomicDataset
- GenomeBins
- GenomicBroadcast
- GenomicDataset
- GenomicDatasetConversion
- GenomicDatasetWithLineage
- GenomicPositionPartitioner
- GenomicRegionPartitioner
- InFormatter
- InFormatterCompanion
- InnerShuffleRegionJoin
- InnerShuffleRegionJoinAndGroupByLeft
- InnerTreeRegionJoin
- InnerTreeRegionJoinAndGroupByRight
- LeftOuterShuffleRegionJoin
- LeftOuterShuffleRegionJoinAndGroupByLeft
- MultisampleAvroGenomicDataset
- MultisampleGenomicDataset
- OutFormatter
- RDDBoundGenericGenomicDataset
- ReferencePartitioner
- RegionJoin
- RightOuterShuffleRegionJoinAndGroupByLeft
- RightOuterTreeRegionJoin
- RightOuterTreeRegionJoinAndGroupByRight
- ShuffleRegionJoin
- SortedIntervalPartitionJoinWithVictims
- TreeRegionJoin
- VictimlessSortedIntervalPartitionJoin

t

org.bdgenomics.adam.rdd

# ADAMSaveAnyArgs 

###

#### trait ADAMSaveAnyArgs extends SaveArgs

Argument configuration for saving any output format.

Linear Supertypes
SaveArgs, ParquetRDDArgs, AnyRef, Any
 
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. ADAMSaveAnyArgs
2. SaveArgs
3. ParquetRDDArgs
4. AnyRef
5. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Abstract Value Members

1.  abstract val asSingleFile: Boolean

   If true and saving as a legacy format, we will write shards so that they can be merged into a single file.

   If true and saving as a legacy format, we will write shards so that they can be merged into a single file.

   See also

     deferMerging

2.  abstract val blockSize: Int
   Definition Classes
     ParquetRDDArgs
3.  abstract val compressionCodec: CompressionCodecName
   Definition Classes
     ParquetRDDArgs
4.  abstract val deferMerging: Boolean

   If true and asSingleFile is true, we will not merge the shards once we write them, and will leave them for the user to merge later.

   If true and asSingleFile is true, we will not merge the shards once we write them, and will leave them for the user to merge later. If false and asSingleFile is true, then we will merge the shards on write. If asSingleFile is false, this is ignored.

   See also

     asSingleFile

5.  abstract val disableDictionaryEncoding: Boolean
   Definition Classes
     ParquetRDDArgs
6.  abstract val disableFastConcat: Boolean

   If asSingleFile is true and deferMerging is false, disables the use of the fast file concatenation engine.

7.  abstract val outputPath: String
   Definition Classes
     SaveArgs
8.  abstract val pageSize: Int
   Definition Classes
     ParquetRDDArgs
9.  abstract val sortFastqOutput: Boolean

   If true and saving as FASTQ, we will sort by read name.

### Concrete Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
6.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
7.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
8.  def finalize(): Unit
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )
9.  final def getClass(): Class[_]
   Definition Classes
     AnyRef → Any
   Annotations
     @native()
10.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
11.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
12.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
13.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
14.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
15.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
16.  def toString(): String
    Definition Classes
      AnyRef → Any
17.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
18.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
19.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from SaveArgs

### Inherited from ParquetRDDArgs

### Inherited from AnyRef

### Inherited from Any

### Ungrouped