ADAM_2.12: Core 0.30.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package rdd
  Definition Classes
    adam
-  package feature
  Definition Classes
    rdd
-  package fragment
  Definition Classes
    rdd
- DatasetBoundFragmentDataset
- FragmentDataset
- InterleavedFASTQInFormatter
- ParquetUnboundFragmentDataset
- RDDBoundFragmentDataset
- Tab5InFormatter
- Tab6InFormatter
-  package read
  Definition Classes
    rdd
-  package sequence
  Definition Classes
    rdd
-  package variant
  Definition Classes
    rdd

p

org.bdgenomics.adam.rdd

# fragment 

#### package fragment

 
Ordering

1. Alphabetic

Visibility

1. Public
2. All

### Type Members

1.  case class DatasetBoundFragmentDataset extends FragmentDataset with DatasetBoundGenomicDataset[Fragment, Fragment, FragmentDataset] with Product with Serializable
2.  sealed abstract class FragmentDataset extends AvroReadGroupGenomicDataset[Fragment, Fragment, FragmentDataset]
3.  class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging
4.  case class ParquetUnboundFragmentDataset extends FragmentDataset with Product with Serializable
5.  case class RDDBoundFragmentDataset extends FragmentDataset with Product with Serializable
6.  class Tab5InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Logging
7.  class Tab6InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Logging

### Value Members

1.  object FragmentDataset

   Helper singleton object for building FragmentDatasets.

2.  object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes interleaved FASTQ.

3.  object Tab5InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.

4.  object Tab6InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes Bowtie tab6 format.

### Ungrouped