ADAM_2.12: Core 0.32.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package rdd
  Definition Classes
    adam
-  package fragment
  Definition Classes
    rdd
- DatasetBoundFragmentDataset
- FragmentDataset
- InterleavedFASTQInFormatter
- ParquetUnboundFragmentDataset
- RDDBoundFragmentDataset
- Tab5InFormatter
- Tab6InFormatter

c

org.bdgenomics.adam.rdd.fragment

# InterleavedFASTQInFormatter 

###
Companion object InterleavedFASTQInFormatter

#### class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging

Linear Supertypes
Logging, InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter], Serializable, Serializable, AnyRef, Any
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Inherited

1. InterleavedFASTQInFormatter
2. Logging
3. InFormatter
4. Serializable
5. Serializable
6. AnyRef
7. Any

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Visibility

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### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
6.  val companion: InterleavedFASTQInFormatter.type
   Attributes
     protected
   Definition Classes
     InterleavedFASTQInFormatter → InFormatter
7.  def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
   Attributes
     protected
   Definition Classes
     Logging
8.  def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit
   Attributes
     protected
   Definition Classes
     Logging
9.  def debug(msg: ⇒ Any): Unit
   Attributes
     protected
   Definition Classes
     Logging
10.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
11.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
12.  def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
13.  def error(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
14.  def error(msg: ⇒ Any): Unit
    Attributes
      protected
    Definition Classes
      Logging
15.  def finalize(): Unit
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )
16.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
17.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
18.  def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
19.  def info(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
20.  def info(msg: ⇒ Any): Unit
    Attributes
      protected
    Definition Classes
      Logging
21.  def isDebugEnabled: Boolean
    Attributes
      protected
    Definition Classes
      Logging
22.  def isErrorEnabled: Boolean
    Attributes
      protected
    Definition Classes
      Logging
23.  def isInfoEnabled: Boolean
    Attributes
      protected
    Definition Classes
      Logging
24.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
25.  def isTraceEnabled: Boolean
    Attributes
      protected
    Definition Classes
      Logging
26.  def isWarnEnabled: Boolean
    Attributes
      protected
    Definition Classes
      Logging
27.  def logger: Logger
    Attributes
      protected
    Definition Classes
      Logging
28.  def loggerName: String
    Attributes
      protected
    Definition Classes
      Logging
29.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
30.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
31.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
32.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
33.  def toString(): String
    Definition Classes
      AnyRef → Any
34.  def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
35.  def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
36.  def trace(msg: ⇒ Any): Unit
    Attributes
      protected
    Definition Classes
      Logging
37.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
38.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
39.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )
40.  def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
41.  def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
      protected
    Definition Classes
      Logging
42.  def warn(msg: ⇒ Any): Unit
    Attributes
      protected
    Definition Classes
      Logging
43.  def write(os: OutputStream, iter: Iterator[Fragment]): Unit

    Writes alignments to an output stream in interleaved FASTQ format.

    Writes alignments to an output stream in interleaved FASTQ format.

    os

      An OutputStream connected to a process we are piping to.

    iter

      An iterator of records to write.

    Definition Classes
      InterleavedFASTQInFormatter → InFormatter

### Inherited from Logging

### Inherited from InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped