ADAM_2.12: Core 0.33.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package rdd
  Definition Classes
    adam
-  package feature
  Definition Classes
    rdd
- BEDInFormatter
- BEDOutFormatter
- CoverageDataset
- DatasetBoundCoverageDataset
- DatasetBoundFeatureDataset
- FeatureDataset
- GFF3InFormatter
- GFF3OutFormatter
- GTFInFormatter
- GTFOutFormatter
- NarrowPeakInFormatter
- NarrowPeakOutFormatter
- ParquetUnboundCoverageDataset
- ParquetUnboundFeatureDataset
- RDDBoundCoverageDataset
- RDDBoundFeatureDataset

c

org.bdgenomics.adam.rdd.feature

# GFF3OutFormatter 

###

#### case class GFF3OutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable

OutFormatter that reads streaming GFF3 format.

stringency

  Validation stringency. Defaults to ValidationStringency.STRICT.

Linear Supertypes
Product, Equals, OutFormatter[Feature], Serializable, Serializable, AnyRef, Any
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Ordering

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2. By Inheritance

Inherited

1. GFF3OutFormatter
2. Product
3. Equals
4. OutFormatter
5. Serializable
6. Serializable
7. AnyRef
8. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new GFF3OutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT)

   stringency

     Validation stringency. Defaults to ValidationStringency.STRICT.

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
6.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
7.  def finalize(): Unit
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )
8.  final def getClass(): Class[_]
   Definition Classes
     AnyRef → Any
   Annotations
     @native()
9.  val gff3Parser: GFF3Parser
10.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
11.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
12.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
13.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
14.  def read(is: InputStream): Iterator[Feature]

    Reads features from an input stream in GFF3 format.

    Reads features from an input stream in GFF3 format.

    is

      An InputStream connected to the process we are piping from.

    returns

      Returns an iterator of Features read from the stream.

    Definition Classes
      GFF3OutFormatter → OutFormatter
15.  val stringency: ValidationStringency
16.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
17.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
18.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
19.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from Product

### Inherited from Equals

### Inherited from OutFormatter[Feature]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped