ADAM_2.12: Core 0.33.0 API < Back
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# Packages

-  package root
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    root
-  package org
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    root
-  package bdgenomics
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    org
-  package adam
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    bdgenomics
-  package rdd
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    adam
-  package variant
  Definition Classes
    rdd
- ADAMVCFOutputFormat
- DatasetBoundGenotypeDataset
- DatasetBoundVariantContextDataset
- DatasetBoundVariantDataset
- GenotypeDataset
- ParquetUnboundGenotypeDataset
- ParquetUnboundVariantDataset
- RDDBoundGenotypeDataset
- RDDBoundVariantContextDataset
- RDDBoundVariantDataset
- VCFInFormatter
- VCFOutFormatter
- VariantContextDataset
- VariantDataset

o

org.bdgenomics.adam.rdd.variant

# VariantContextDataset 

###
Companion class VariantContextDataset

#### object VariantContextDataset extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
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1. VariantContextDataset
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### Value Members

1.  final def !=(arg0: Any): Boolean
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2.  final def ##(): Int
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3.  final def ==(arg0: Any): Boolean
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4.  def apply(ds: Dataset[VariantContext], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

   Builds a VariantContextDataset from a Dataset.

   Builds a VariantContextDataset from a Dataset.

   ds

     The underlying VariantContext dataset.

   sequences

     The sequence dictionary for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

5.  def apply(ds: Dataset[VariantContext], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

   Builds a VariantContextDataset from a Dataset.

   Builds a VariantContextDataset from a Dataset.

   ds

     The underlying VariantContext dataset.

   references

     The references for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

6.  def apply(ds: Dataset[VariantContext]): VariantContextDataset

   Builds a VariantContextDataset from a Dataset.

   Builds a VariantContextDataset from a Dataset.

   ds

     The underlying VariantContext dataset.

   returns

     A new VariantContextDataset.

7.  def apply(rdd: RDD[VariantContext], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantContextDataset

   Builds a VariantContextDataset from an RDD.

   Builds a VariantContextDataset from an RDD.

   rdd

     The underlying VariantContext RDD.

   sequences

     The sequence dictionary for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

8.  def apply(rdd: RDD[VariantContext], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

   Builds a VariantContextDataset from an RDD.

   Builds a VariantContextDataset from an RDD.

   rdd

     The underlying VariantContext RDD.

   references

     The references for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantContextDataset.

9.  final def asInstanceOf[T0]: T0
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10.  def clone(): AnyRef
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### Inherited from Serializable

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