ADAM_2.12: Core 0.33.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package models
  Definition Classes
    adam
- Alphabet
- Attribute
- Coverage
- DNAAlphabet
- MdTag
- MdTagEvent
- OptionalPositionOrdering
- OptionalReferenceOrdering
- OptionalRegionOrdering
- PositionOrdering
- ReadGroup
- ReadGroupDictionary
- ReferenceOrdering
- ReferencePosition
- ReferencePositionSerializer
- ReferenceRegion
- ReferenceRegionSerializer
- RegionOrdering
- SequenceDictionary
- SequenceRecord
- SnpTable
- Symbol
- TagType
- VariantContext
- VariantContextSerializer

o

org.bdgenomics.adam.models

# VariantContext 

###
Companion class VariantContext

#### object VariantContext extends Serializable

Singleton object for building VariantContexts.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
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### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def apply(v: Variant, genotypes: Iterable[Genotype]): VariantContext

   Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation

   Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation

   v

     Variant which is used to construct the ReferencePosition

   genotypes

     Seq[Genotype]

   returns

     VariantContext corresponding to the Variant

5.  def apply(v: Variant): VariantContext

   Constructs an VariantContext from an Variant

   Constructs an VariantContext from an Variant

   v

     Variant which is used to construct the ReferencePosition

   returns

     VariantContext corresponding to the Variant

6.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
7.  def buildFromGenotypes(genotypes: Seq[Genotype]): VariantContext

   Builds a variant context off of a set of genotypes.

   Builds a variant context off of a set of genotypes. Builds variants from the genotypes.

   genotypes

     List of genotypes to build variant context from.

   returns

     A variant context corresponding to the variants and genotypes at this site.

   Note

     Genotypes must be at the same position.

8.  def clone(): AnyRef
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     protected[java.lang]
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     @native() @throws( ... )
9.  final def eq(arg0: AnyRef): Boolean
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10.  def equals(arg0: Any): Boolean
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11.  def finalize(): Unit
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12.  final def getClass(): Class[_]
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13.  def hashCode(): Int
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      @native()
14.  final def isInstanceOf[T0]: Boolean
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15.  final def ne(arg0: AnyRef): Boolean
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16.  final def notify(): Unit
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17.  final def notifyAll(): Unit
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18.  final def synchronized[T0](arg0: ⇒ T0): T0
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19.  def toString(): String
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20.  final def wait(): Unit
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21.  final def wait(arg0: Long, arg1: Int): Unit
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22.  final def wait(arg0: Long): Unit
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### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

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