ADAM_2.12: CLI 0.33.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package cli
  Definition Classes
    adam
- ADAM2Fastq
- ADAM2FastqArgs
- ADAMMain
- ADAMModule
- About
- CommandGroup
- CountReadKmers
- CountReadKmersArgs
- CountSliceKmers
- CountSliceKmersArgs
- Coverage
- CoverageArgs
- FlagStat
- FlagStatArgs
- MergeShards
- MergeShardsArgs
- PrintADAM
- PrintADAMArgs
- TransformAlignments
- TransformAlignmentsArgs
- TransformFeatures
- TransformFeaturesArgs
- TransformFragments
- TransformFragmentsArgs
- TransformGenotypes
- TransformGenotypesArgs
- TransformSequences
- TransformSequencesArgs
- TransformSlices
- TransformSlicesArgs
- TransformVariants
- TransformVariantsArgs
- View
- ViewArgs

c

org.bdgenomics.adam.cli

# ADAM2FastqArgs 

###

#### class ADAM2FastqArgs extends Args4jBase

Linear Supertypes
Args4jBase, AnyRef, Any
 
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. ADAM2FastqArgs
2. Args4jBase
3. AnyRef
4. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Instance Constructors

1.  new ADAM2FastqArgs()

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  var asSingleFile: Boolean
6.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
7.  var disableFastConcat: Boolean
8.  var disableProjection: Boolean
9.  var doPrintUsage: Boolean
   Definition Classes
     Args4jBase
10.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
11.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
12.  def finalize(): Unit
    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )
13.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
14.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
15.  var inputPath: String
16.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
17.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
18.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
19.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
20.  var outputPath: String
21.  var outputPath2: String
22.  var persistLevel: String
23.  var repartition: Int
24.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
25.  def toString(): String
    Definition Classes
      AnyRef → Any
26.  var validationStringency: ValidationStringency
27.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
28.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
29.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )
30.  var writeOriginalQualityScores: Boolean

### Inherited from Args4jBase

### Inherited from AnyRef

### Inherited from Any

### Ungrouped