ADAM_2.12: Core 0.33.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package sql
  Definition Classes
    adam
- Alignment
- Dbxref
- Feature
- Fragment
- Genotype
- OntologyTerm
- ProcessingStep
- Read
- Reference
- Sequence
- Slice
- TranscriptEffect
- Variant
- VariantAnnotation
- VariantCallingAnnotations
- VariantContext

c

org.bdgenomics.adam.sql

# Fragment 

###
Companion object Fragment

#### case class Fragment(name: Option[String] = None, readGroupId: Option[String] = None, insertSize: Option[Int] = None, alignments: Seq[Alignment] = Seq()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. Fragment
2. Serializable
3. Serializable
4. Product
5. Equals
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new Fragment(name: Option[String] = None, readGroupId: Option[String] = None, insertSize: Option[Int] = None, alignments: Seq[Alignment] = Seq())

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  val alignments: Seq[Alignment]
5.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
6.  def canEqual(that: Any): Boolean
   Definition Classes
     Fragment → Equals
7.  def clone(): AnyRef
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @native() @throws( ... )
8.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
9.  def finalize(): Unit
   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] )
10.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native()
11.  val insertSize: Option[Int]
12.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
13.  val name: Option[String]
14.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
15.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
16.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native()
17.  def productArity: Int
    Definition Classes
      Fragment → Product
18.  def productElement(i: Int): Any
    Definition Classes
      Fragment → Product
19.  val readGroupId: Option[String]
20.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
21.  def toAvro: formats.avro.Fragment
22.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
23.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
24.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @throws( ... )

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from AnyRef

### Inherited from Any

### Ungrouped