ADAM_2.12: Core 0.33.0 API < Back
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org.bdgenomics.adam.rdd

# GenomicRegionPartitioner 

###
Companion class GenomicRegionPartitioner

#### object GenomicRegionPartitioner extends Serializable

Helper object for creating GenomicRegionPartitioners.

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Serializable, Serializable, AnyRef, Any
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4.  def apply(numParts: Int, seqDict: SequenceDictionary): GenomicRegionPartitioner

   Creates a GenomicRegionPartitioner with a specific number of partitions.

   Creates a GenomicRegionPartitioner with a specific number of partitions.

   numParts

     The number of partitions to have in the new partitioner.

   seqDict

     A sequence dictionary describing the known genomic contigs.

   returns

     Returns a partitioner that divides the known genome into a set number of partitions.

5.  def apply(partitionSize: Long, seqDict: SequenceDictionary): GenomicRegionPartitioner

   Creates a GenomicRegionPartitioner where partitions cover a specific range of the genome.

   Creates a GenomicRegionPartitioner where partitions cover a specific range of the genome.

   partitionSize

     The number of bases in the reference genome that each partition should cover.

   seqDict

     A sequence dictionary describing the known genomic contigs.

   returns

     Returns a partitioner that divides the known genome into partitions of fixed size.

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