ADAM_2.12: Core 0.35.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package feature
  Definition Classes
    ds
- BEDInFormatter
- BEDOutFormatter
- CoverageDataset
- DatasetBoundCoverageDataset
- DatasetBoundFeatureDataset
- FeatureDataset
- GFF3InFormatter
- GFF3OutFormatter
- GTFInFormatter
- GTFOutFormatter
- NarrowPeakInFormatter
- NarrowPeakOutFormatter
- ParquetUnboundCoverageDataset
- ParquetUnboundFeatureDataset
- RDDBoundCoverageDataset
- RDDBoundFeatureDataset

o

org.bdgenomics.adam.ds.feature

# BEDInFormatter 

###
Companion class BEDInFormatter

#### object BEDInFormatter extends InFormatterCompanion[Feature, Feature, FeatureDataset, BEDInFormatter] with Serializable

InFormatter companion that builds a BEDInFormatter to write features in BED format to a pipe.

Linear Supertypes
Serializable, Serializable, InFormatterCompanion[Feature, Feature, FeatureDataset, BEDInFormatter], AnyRef, Any
 
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. BEDInFormatter
2. Serializable
3. Serializable
4. InFormatterCompanion
5. AnyRef
6. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def apply(fRdd: FeatureDataset): BEDInFormatter

   Apply method for building the BEDInFormatter from a FeatureDataset.

   Apply method for building the BEDInFormatter from a FeatureDataset.

   fRdd

     FeatureDataset to build from.

   returns

     Returns an InFormatter with attached metadata.

   Definition Classes
     BEDInFormatter → InFormatterCompanion
5.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
6.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
9.  final def getClass(): Class[_]
   Definition Classes
     AnyRef → Any
   Annotations
     @native() @HotSpotIntrinsicCandidate()
10.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
11.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
12.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
13.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
14.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
15.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
16.  def toString(): String
    Definition Classes
      AnyRef → Any
17.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
18.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
19.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from Serializable

### Inherited from InFormatterCompanion[Feature, Feature, FeatureDataset, BEDInFormatter]

### Inherited from AnyRef

### Inherited from Any

### Ungrouped