ADAM_2.12: Core 0.35.0 API < Back
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# Packages

-  package root
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    root
-  package org
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    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package variant
  Definition Classes
    ds
- ADAMVCFOutputFormat
- DatasetBoundGenotypeDataset
- DatasetBoundVariantContextDataset
- DatasetBoundVariantDataset
- GenotypeDataset
- ParquetUnboundGenotypeDataset
- ParquetUnboundVariantDataset
- RDDBoundGenotypeDataset
- RDDBoundVariantContextDataset
- RDDBoundVariantDataset
- VCFInFormatter
- VCFOutFormatter
- VariantContextDataset
- VariantDataset

o

org.bdgenomics.adam.ds.variant

# VariantDataset 

###
Companion class VariantDataset

#### object VariantDataset extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
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1. VariantDataset
2. Serializable
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### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def apply(ds: Dataset[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine]): VariantDataset

   Builds a VariantDataset from a Dataset.

   Builds a VariantDataset from a Dataset.

   ds

     The underlying Variant Dataset.

   sequences

     The sequence dictionary for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantDataset.

5.  def apply(ds: Dataset[Variant], references: Iterable[Reference], headerLines: Seq[VCFHeaderLine]): VariantDataset

   Builds a VariantDataset from a Dataset.

   Builds a VariantDataset from a Dataset.

   ds

     The underlying Variant Dataset.

   references

     The references for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantDataset.

6.  def apply(ds: Dataset[Variant]): VariantDataset

   Builds a VariantDataset from a Dataset.

   Builds a VariantDataset from a Dataset.

   ds

     The underlying Variant Dataset.

   returns

     A new VariantDataset.

7.  def apply(rdd: RDD[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantDataset

   Builds a VariantDataset from an RDD.

   Builds a VariantDataset from an RDD.

   rdd

     The underlying Variant RDD.

   sequences

     The sequence dictionary for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantDataset.

8.  def apply(rdd: RDD[Variant], references: Iterable[Reference], headerLines: Seq[VCFHeaderLine]): VariantDataset

   Builds a VariantDataset from an RDD.

   Builds a VariantDataset from an RDD.

   rdd

     The underlying Variant RDD.

   references

     The references for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new VariantDataset.

9.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
10.  def clone(): AnyRef
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11.  final def eq(arg0: AnyRef): Boolean
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12.  def equals(arg0: Any): Boolean
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13.  final def getClass(): Class[_]
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14.  def hashCode(): Int
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15.  final def isInstanceOf[T0]: Boolean
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16.  final def ne(arg0: AnyRef): Boolean
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17.  final def notify(): Unit
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18.  final def notifyAll(): Unit
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19.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
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20.  def toString(): String
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21.  final def wait(arg0: Long, arg1: Int): Unit
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      @throws( ... )
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23.  final def wait(): Unit
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### Deprecated Value Members

1.  def finalize(): Unit
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     protected[lang]
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     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

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