ADAM_2.12: Core 0.36.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package projections
  Definition Classes
    adam
- AlignmentField
- DbxrefField
- FeatureField
- FieldEnumeration
- FieldValue
- Filter
- FragmentField
- GenotypeField
- OntologyTermField
- Projection
- ReadField
- ReadGroupField
- ReferenceField
- SampleField
- SequenceField
- SliceField
- TranscriptEffectField
- VariantAnnotationField
- VariantCallingAnnotationsField
- VariantField

o

org.bdgenomics.adam.projections

# TranscriptEffectField 

###

#### object TranscriptEffectField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. TranscriptEffectField
2. FieldEnumeration
3. Enumeration
4. Serializable
5. Serializable
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Type Members

1.  class SchemaVal extends Val with FieldValue

   An enumerated field that is part of this schema.

   An enumerated field that is part of this schema.

   Definition Classes
     FieldEnumeration
2.  class Val extends Value with Serializable
   Attributes
     protected
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
3.  abstract class Value extends Ordered[Value] with Serializable
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
4.  class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable
   Definition Classes
     Enumeration

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def SchemaValue: SchemaVal
   Attributes
     protected
   Definition Classes
     FieldEnumeration
5.  final def Value(i: Int, name: String): Value
   Attributes
     protected
   Definition Classes
     Enumeration
6.  final def Value(name: String): Value
   Attributes
     protected
   Definition Classes
     Enumeration
7.  final def Value(i: Int): Value
   Attributes
     protected
   Definition Classes
     Enumeration
8.  final def Value: Value
   Attributes
     protected
   Definition Classes
     Enumeration
9.  val alternateAllele: SchemaVal
10.  val alternateCodingSequence: SchemaVal
11.  val alternateProteinSequence: SchemaVal
12.  final def apply(x: Int): Value
    Definition Classes
      Enumeration
13.  final def asInstanceOf[T0]: T0
    Definition Classes
      Any
14.  val biotype: SchemaVal
15.  val cdnaLength: SchemaVal
16.  val cdnaPosition: SchemaVal
17.  def clone(): AnyRef
    Attributes
      protected[lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native() @HotSpotIntrinsicCandidate()
18.  val codingSequenceLength: SchemaVal
19.  val codingSequencePosition: SchemaVal
20.  val distance: SchemaVal
21.  val effects: SchemaVal
22.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
23.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
24.  val featureId: SchemaVal
25.  val featureType: SchemaVal
26.  val geneId: SchemaVal
27.  val geneName: SchemaVal
28.  val genomicHgvs: SchemaVal
29.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
30.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
31.  val impact: SchemaVal
32.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
33.  final def maxId: Int
    Definition Classes
      Enumeration
34.  val messages: SchemaVal
35.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
36.  var nextId: Int
    Attributes
      protected
    Definition Classes
      Enumeration
37.  var nextName: Iterator[String]
    Attributes
      protected
    Definition Classes
      Enumeration
38.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
39.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
40.  val proteinHgvs: SchemaVal
41.  val proteinLength: SchemaVal
42.  val proteinPosition: SchemaVal
43.  val rank: SchemaVal
44.  def readResolve(): AnyRef
    Attributes
      protected
    Definition Classes
      Enumeration
45.  val recordSchema: Schema
    Definition Classes
      FieldEnumeration
46.  val referenceCodingSequence: SchemaVal
47.  val referenceProteinSequence: SchemaVal
48.  val strand: SchemaVal
49.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
50.  def toString(): String
    Definition Classes
      Enumeration → AnyRef → Any
51.  val total: SchemaVal
52.  val transcriptHgvs: SchemaVal
53.  def values: ValueSet
    Definition Classes
      Enumeration
54.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
55.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
56.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
57.  final def withName(s: String): Value
    Definition Classes
      Enumeration

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from FieldEnumeration

### Inherited from Enumeration

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped