ADAM_2.12: Core 0.36.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package models
  Definition Classes
    adam
- Alphabet
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- TagType
- VariantContext
- VariantContextSerializer

o

org.bdgenomics.adam.models

# TagType 

###

#### object TagType extends Enumeration

An enumeration that describes the different data types that can be stored in an attribute.

Linear Supertypes
Enumeration, Serializable, Serializable, AnyRef, Any
 
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. TagType
2. Enumeration
3. Serializable
4. Serializable
5. AnyRef
6. Any

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Visibility

1. Public
2. All

### Type Members

1.  class TypeVal extends Val

   A representation of the type of data stored in a tagged field.

2.  class Val extends Value with Serializable
   Attributes
     protected
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
3.  abstract class Value extends Ordered[Value] with Serializable
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID()
4.  class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable
   Definition Classes
     Enumeration

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  val ByteSequence: Val

   An attribute storing hex formatted bytes.

   An attribute storing hex formatted bytes. SAM "H".

5.  val Character: Val

   An attribute storing a character.

   An attribute storing a character. SAM "A".

6.  val Float: Val

   An attribute storing a floating point value.

   An attribute storing a floating point value. SAM "f".

7.  val Integer: Val

   An attribute storing an integer.

   An attribute storing an integer. SAM "i".

8.  val NumericByteSequence: Val

   An attribute storing a numeric array of signed bytes.

   An attribute storing a numeric array of signed bytes. SAM "B:c".

9.  val NumericFloatSequence: Val

   An attribute storing a numeric array of floats.

   An attribute storing a numeric array of floats. SAM "B:f".

10.  val NumericIntSequence: Val

    An attribute storing a numeric array of signed ints.

    An attribute storing a numeric array of signed ints. SAM "B:i".

11.  val NumericShortSequence: Val

    An attribute storing a numeric array of signed short ints.

    An attribute storing a numeric array of signed short ints. SAM "B:i".

12.  val NumericUnsignedByteSequence: Val

    An attribute storing a numeric array of unsigned bytes.

    An attribute storing a numeric array of unsigned bytes. SAM "B:C".

13.  val NumericUnsignedIntSequence: Val

    An attribute storing a numeric array of unsigned ints.

    An attribute storing a numeric array of unsigned ints. SAM "B:I".

14.  val NumericUnsignedShortSequence: Val

    An attribute storing a numeric array of unsigned short ints.

    An attribute storing a numeric array of unsigned short ints. SAM "B:i".

15.  val String: Val

    An attribute storing a string.

    An attribute storing a string. SAM "Z".

16.  final def Value(i: Int, name: String): Value
    Attributes
      protected
    Definition Classes
      Enumeration
17.  final def Value(name: String): Value
    Attributes
      protected
    Definition Classes
      Enumeration
18.  final def Value(i: Int): Value
    Attributes
      protected
    Definition Classes
      Enumeration
19.  final def Value: Value
    Attributes
      protected
    Definition Classes
      Enumeration
20.  final def apply(x: Int): Value
    Definition Classes
      Enumeration
21.  final def asInstanceOf[T0]: T0
    Definition Classes
      Any
22.  def clone(): AnyRef
    Attributes
      protected[lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native() @HotSpotIntrinsicCandidate()
23.  final def eq(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
24.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
25.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
26.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
27.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
28.  final def maxId: Int
    Definition Classes
      Enumeration
29.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
30.  var nextId: Int
    Attributes
      protected
    Definition Classes
      Enumeration
31.  var nextName: Iterator[String]
    Attributes
      protected
    Definition Classes
      Enumeration
32.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
33.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
34.  def readResolve(): AnyRef
    Attributes
      protected
    Definition Classes
      Enumeration
35.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
36.  def toString(): String
    Definition Classes
      Enumeration → AnyRef → Any
37.  def values: ValueSet
    Definition Classes
      Enumeration
38.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
39.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
40.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
41.  final def withName(s: String): Value
    Definition Classes
      Enumeration

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from Enumeration

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped