ADAM_2.12: Core 0.36.0 API < Back
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# Packages

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-  package org
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-  package bdgenomics
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-  package adam
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    bdgenomics
-  package models
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    adam
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o

org.bdgenomics.adam.models

# ReadGroup 

###
Companion class ReadGroup

#### object ReadGroup extends Serializable

Singleton object for creating ReaGroups.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
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1. ReadGroup
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### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def apply(samRGR: SAMReadGroupRecord): ReadGroup

   Converts a SAMReadGroupRecord into a ReadGroup.

   Converts a SAMReadGroupRecord into a ReadGroup.

   samRGR

     SAMReadGroupRecord to convert.

   returns

     Returns an equivalent ADAM format read group.

5.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
6.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
9.  def fromAvro(readGroups: Seq[formats.avro.ReadGroup]): ReadGroupDictionary
10.  def fromAvro(readGroup: formats.avro.ReadGroup): ReadGroup

    Converts the Avro ReadGroup record into a model ReadGroup.

    Converts the Avro ReadGroup record into a model ReadGroup.

    Although the ReadGroup class is serializable, when saving the record to disk, we want to save it as Avro. This method allows us to go from the Avro format which we use on disk into the class we use in memory.

    readGroup

      ReadGroup record loaded from disk.

    returns

      Avro record converted into ReadGroup representation.

11.  final def getClass(): Class[_]
    Definition Classes
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    Annotations
      @native() @HotSpotIntrinsicCandidate()
12.  def hashCode(): Int
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    Annotations
      @native() @HotSpotIntrinsicCandidate()
13.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
14.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
15.  final def notify(): Unit
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      @native() @HotSpotIntrinsicCandidate()
16.  final def notifyAll(): Unit
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      @native() @HotSpotIntrinsicCandidate()
17.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
18.  def toString(): String
    Definition Classes
      AnyRef → Any
19.  final def wait(arg0: Long, arg1: Int): Unit
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    Annotations
      @throws( ... )
20.  final def wait(arg0: Long): Unit
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      @throws( ... ) @native()
21.  final def wait(): Unit
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      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
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     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

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