ADAM_2.12: CLI 0.36.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package cli
  Definition Classes
    adam
- ADAM2Fastq
- ADAM2FastqArgs
- ADAMMain
- ADAMModule
- About
- CommandGroup
- CountReadKmers
- CountReadKmersArgs
- CountSliceKmers
- CountSliceKmersArgs
- Coverage
- CoverageArgs
- FlagStat
- FlagStatArgs
- MergeShards
- MergeShardsArgs
- PrintADAM
- PrintADAMArgs
- TransformAlignments
- TransformAlignmentsArgs
- TransformFeatures
- TransformFeaturesArgs
- TransformFragments
- TransformFragmentsArgs
- TransformGenotypes
- TransformGenotypesArgs
- TransformSequences
- TransformSequencesArgs
- TransformSlices
- TransformSlicesArgs
- TransformVariants
- TransformVariantsArgs
- View
- ViewArgs

o

org.bdgenomics.adam.cli

# TransformVariants 

###
Companion class TransformVariants

#### object TransformVariants extends BDGCommandCompanion

Linear Supertypes
BDGCommandCompanion, AnyRef, Any
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Inherited

1. TransformVariants
2. BDGCommandCompanion
3. AnyRef
4. Any

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Visibility

1. Public
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### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def apply(cmdLine: Array[String]): TransformVariants
   Definition Classes
     TransformVariants → BDGCommandCompanion
5.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
6.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
7.  val commandDescription: String
   Definition Classes
     TransformVariants → BDGCommandCompanion
8.  val commandName: String
   Definition Classes
     TransformVariants → BDGCommandCompanion
9.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
10.  def equals(arg0: Any): Boolean
    Definition Classes
      AnyRef → Any
11.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
12.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
13.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
14.  def main(cmdLine: Array[String]): Unit
    Definition Classes
      BDGCommandCompanion
15.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
16.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
17.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
18.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
19.  def toString(): String
    Definition Classes
      AnyRef → Any
20.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
21.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
22.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from BDGCommandCompanion

### Inherited from AnyRef

### Inherited from Any

### Ungrouped