ADAM_2.12: Core 0.36.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package models
  Definition Classes
    adam
- Alphabet
- Attribute
- Coverage
- DNAAlphabet
- MdTag
- MdTagEvent
- OptionalPositionOrdering
- OptionalReferenceOrdering
- OptionalRegionOrdering
- PositionOrdering
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- ReadGroupDictionary
- ReferenceOrdering
- ReferencePosition
- ReferencePositionSerializer
- ReferenceRegion
- ReferenceRegionSerializer
- RegionOrdering
- SequenceDictionary
- SequenceRecord
- SnpTable
- Symbol
- TagType
- VariantContext
- VariantContextSerializer

c

org.bdgenomics.adam.models

# Attribute 

###

#### case class Attribute(tag: String, tagType: TagType.Value, value: Any) extends Product with Serializable

A wrapper around the attrTuple (key) and value pair seen in many formats.

Includes the attrTuple-type explicitly, rather than embedding the corresponding information in the type of 'value', because otherwise it'd be difficult to extract the correct type for Byte and NumericSequence values.

This class is roughly analogous to htsjdk's SAMTagAndValue.

tag

  The string key associated with this pair.

tagType

  An enumerated value representing the type of the 'value' parameter.

value

  The 'value' half of the pair.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. Attribute
2. Serializable
3. Serializable
4. Product
5. Equals
6. AnyRef
7. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new Attribute(tag: String, tagType: TagType.Value, value: Any)

   tag

     The string key associated with this pair.

   tagType

     An enumerated value representing the type of the 'value' parameter.

   value

     The 'value' half of the pair.

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
6.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
7.  final def getClass(): Class[_]
   Definition Classes
     AnyRef → Any
   Annotations
     @native() @HotSpotIntrinsicCandidate()
8.  final def isInstanceOf[T0]: Boolean
   Definition Classes
     Any
9.  final def ne(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
10.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
11.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
12.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
13.  val tag: String
14.  val tagType: TagType.Value
15.  def toString(): String
    Definition Classes
      Attribute → AnyRef → Any
16.  val value: Any
17.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
18.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
19.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from Serializable

### Inherited from Product

### Inherited from Equals

### Inherited from AnyRef

### Inherited from Any

### Ungrouped