ADAM_2.12: Core 0.36.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package feature
  Definition Classes
    ds
- BEDInFormatter
- BEDOutFormatter
- CoverageDataset
- DatasetBoundCoverageDataset
- DatasetBoundFeatureDataset
- FeatureDataset
- GFF3InFormatter
- GFF3OutFormatter
- GTFInFormatter
- GTFOutFormatter
- NarrowPeakInFormatter
- NarrowPeakOutFormatter
- ParquetUnboundCoverageDataset
- ParquetUnboundFeatureDataset
- RDDBoundCoverageDataset
- RDDBoundFeatureDataset

c

org.bdgenomics.adam.ds.feature

# BEDInFormatter 

###
Companion object BEDInFormatter

#### case class BEDInFormatter extends InFormatter[Feature, Feature, FeatureDataset, BEDInFormatter] with Product with Serializable

Linear Supertypes
Product, Equals, InFormatter[Feature, Feature, FeatureDataset, BEDInFormatter], Serializable, Serializable, AnyRef, Any
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Inherited

1. BEDInFormatter
2. Product
3. Equals
4. InFormatter
5. Serializable
6. Serializable
7. AnyRef
8. Any

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Visibility

1. Public
2. All

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
6.  val companion: BEDInFormatter.type
   Attributes
     protected
   Definition Classes
     BEDInFormatter → InFormatter
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  final def getClass(): Class[_]
   Definition Classes
     AnyRef → Any
   Annotations
     @native() @HotSpotIntrinsicCandidate()
9.  final def isInstanceOf[T0]: Boolean
   Definition Classes
     Any
10.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
11.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
12.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
13.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
14.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
15.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
16.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
17.  def write(os: OutputStream, iter: Iterator[Feature]): Unit

    Writes features to an output stream in BED format.

    Writes features to an output stream in BED format.

    os

      An OutputStream connected to a process we are piping to.

    iter

      An iterator of features to write.

    Definition Classes
      BEDInFormatter → InFormatter

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
   Deprecated

     (Since version ) see corresponding Javadoc for more information.

### Inherited from Product

### Inherited from Equals

### Inherited from InFormatter[Feature, Feature, FeatureDataset, BEDInFormatter]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped