ADAM_2.12: Core 0.37.0 API < Back
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# Packages

-  package root
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-  package org
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-  package bdgenomics
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-  package adam
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-  package ds
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-  package sequence
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    ds
- DatasetBoundSequenceDataset
- DatasetBoundSliceDataset
- FASTAInFormatter
- ParquetUnboundSequenceDataset
- ParquetUnboundSliceDataset
- RDDBoundSequenceDataset
- RDDBoundSliceDataset
- SequenceDataset
- SliceDataset

o

org.bdgenomics.adam.ds.sequence

# SequenceDataset 

###
Companion class SequenceDataset

#### object SequenceDataset

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### Value Members

1.  final def !=(arg0: Any): Boolean
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2.  final def ##(): Int
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3.  final def ==(arg0: Any): Boolean
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4.  val FASTA_LINE_WIDTH: String

   Hadoop configuration path to specify line width at which to hard wrap FASTA formatted sequences.

   Hadoop configuration path to specify line width at which to hard wrap FASTA formatted sequences. Defaults to 60.

5.  def apply(rdd: RDD[Sequence], references: SequenceDictionary, samples: Iterable[Sample]): SequenceDataset

   A genomic dataset that wraps an RDD of Sequence data.

   A genomic dataset that wraps an RDD of Sequence data.

   rdd

     The underlying Sequence RDD to build from.

   references

     The reference genome these data are aligned to.

   samples

     Samples for these sequences.

   returns

     Returns a new SequenceDataset.

6.  def apply(rdd: RDD[Sequence]): SequenceDataset

   A genomic dataset that wraps an RDD of Sequence data.

   A genomic dataset that wraps an RDD of Sequence data.

   rdd

     The underlying Sequence RDD to build from.

   returns

     Returns a new SequenceDataset.

7.  def apply(ds: Dataset[Sequence], references: SequenceDictionary, samples: Iterable[Sample]): SequenceDataset

   A genomic dataset that wraps a dataset of Sequence data.

   A genomic dataset that wraps a dataset of Sequence data.

   ds

     A Dataset of sequences.

   references

     The reference genome these data are aligned to.

   samples

     Samples for these sequences.

8.  def apply(ds: Dataset[Sequence]): SequenceDataset

   A genomic dataset that wraps a dataset of Sequence data.

   A genomic dataset that wraps a dataset of Sequence data.

   ds

     A Dataset of sequences.

9.  final def asInstanceOf[T0]: T0
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10.  def clone(): AnyRef
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