ADAM_2.12: Core 1.0.1 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package models
  Definition Classes
    adam
- Alphabet
- Attribute
- Coverage
- DNAAlphabet
- IUPACAlphabet
- MdTag
- MdTagEvent
- OptionalPositionOrdering
- OptionalReferenceOrdering
- OptionalRegionOrdering
- PositionOrdering
- ReadGroup
- ReadGroupDictionary
- ReferenceOrdering
- ReferencePosition
- ReferencePositionSerializer
- ReferenceRegion
- ReferenceRegionSerializer
- RegionOrdering
- SequenceDictionary
- SequenceRecord
- SnpTable
- Symbol
- TagType
- VariantContext
- VariantContextSerializer

o

org.bdgenomics.adam.models

# RegionOrdering 

###

#### object RegionOrdering extends ReferenceOrdering[ReferenceRegion]

A sort order that orders all given regions lexicographically by reference and numerically within a single reference sequence, and puts all non-provided regions at the end. Regions are compared by start position first. If start positions are equal, then we compare by end position.

Linear Supertypes
ReferenceOrdering[ReferenceRegion], Ordering[ReferenceRegion], PartialOrdering[ReferenceRegion], Equiv[ReferenceRegion], Serializable, Serializable, Comparator[ReferenceRegion], AnyRef, Any
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Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. RegionOrdering
2. ReferenceOrdering
3. Ordering
4. PartialOrdering
5. Equiv
6. Serializable
7. Serializable
8. Comparator
9. AnyRef
10. Any

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Visibility

1. Public
2. All

### Type Members

1.  class Ops extends AnyRef
   Definition Classes
     Ordering

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
6.  def compare(a: ReferenceRegion, b: ReferenceRegion): Int
   Definition Classes
     ReferenceOrdering → Ordering → Comparator
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  def equals(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
9.  def equiv(x: ReferenceRegion, y: ReferenceRegion): Boolean
   Definition Classes
     Ordering → PartialOrdering → Equiv
10.  final def getClass(): Class[_]
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
11.  def gt(x: ReferenceRegion, y: ReferenceRegion): Boolean
    Definition Classes
      Ordering → PartialOrdering
12.  def gteq(x: ReferenceRegion, y: ReferenceRegion): Boolean
    Definition Classes
      Ordering → PartialOrdering
13.  def hashCode(): Int
    Definition Classes
      AnyRef → Any
    Annotations
      @native() @HotSpotIntrinsicCandidate()
14.  final def isInstanceOf[T0]: Boolean
    Definition Classes
      Any
15.  def lt(x: ReferenceRegion, y: ReferenceRegion): Boolean
    Definition Classes
      Ordering → PartialOrdering
16.  def lteq(x: ReferenceRegion, y: ReferenceRegion): Boolean
    Definition Classes
      Ordering → PartialOrdering
17.  def max(x: ReferenceRegion, y: ReferenceRegion): ReferenceRegion
    Definition Classes
      Ordering
18.  def min(x: ReferenceRegion, y: ReferenceRegion): ReferenceRegion
    Definition Classes
      Ordering
19.  implicit def mkOrderingOps(lhs: ReferenceRegion): Ops
    Definition Classes
      Ordering
20.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
21.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
22.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
23.  def on[U](f: (U) ⇒ ReferenceRegion): Ordering[U]
    Definition Classes
      Ordering
24.  def reverse: Ordering[ReferenceRegion]
    Definition Classes
      Ordering → PartialOrdering
25.  def reversed(): Comparator[ReferenceRegion]
    Definition Classes
      Comparator
26.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
27.  def thenComparing[U <: Comparable[_ >: U]](arg0: Function[_ >: ReferenceRegion, _ <: U]): Comparator[ReferenceRegion]
    Definition Classes
      Comparator
28.  def thenComparing[U](arg0: Function[_ >: ReferenceRegion, _ <: U], arg1: Comparator[_ >: U]): Comparator[ReferenceRegion]
    Definition Classes
      Comparator
29.  def thenComparing(arg0: Comparator[_ >: ReferenceRegion]): Comparator[ReferenceRegion]
    Definition Classes
      Comparator
30.  def thenComparingDouble(arg0: ToDoubleFunction[_ >: ReferenceRegion]): Comparator[ReferenceRegion]
    Definition Classes
      Comparator
31.  def thenComparingInt(arg0: ToIntFunction[_ >: ReferenceRegion]): Comparator[ReferenceRegion]
    Definition Classes
      Comparator
32.  def thenComparingLong(arg0: ToLongFunction[_ >: ReferenceRegion]): Comparator[ReferenceRegion]
    Definition Classes
      Comparator
33.  def toString(): String
    Definition Classes
      AnyRef → Any
34.  def tryCompare(x: ReferenceRegion, y: ReferenceRegion): Some[Int]
    Definition Classes
      Ordering → PartialOrdering
35.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
36.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
37.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated
   Deprecated

### Inherited from ReferenceOrdering[ReferenceRegion]

### Inherited from Ordering[ReferenceRegion]

### Inherited from PartialOrdering[ReferenceRegion]

### Inherited from Equiv[ReferenceRegion]

### Inherited from Serializable

### Inherited from Comparator[ReferenceRegion]

### Inherited from AnyRef

### Inherited from Any

### Ungrouped