ADAM_2.12: Core 1.0.1 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package feature
  Definition Classes
    ds
-  package fragment
  Definition Classes
    ds
-  package read
  Definition Classes
    ds
-  package sequence
  Definition Classes
    ds
-  package variant
  Definition Classes
    ds
- ADAMContext
- ADAMSaveAnyArgs
- AvroGenomicDataset
- AvroReadGroupGenomicDataset
- DatasetBoundGenericGenomicDataset
- DatasetBoundGenomicDataset
- FullOuterShuffleRegionJoin
- GenericConverter
- GenericGenomicDataset
- GenomeBins
- GenomicBroadcast
- GenomicDataset
- GenomicDatasetConversion
- GenomicDatasetWithLineage
- GenomicPositionPartitioner
- GenomicRegionPartitioner
- InFormatter
- InFormatterCompanion
- InnerShuffleRegionJoin
- InnerShuffleRegionJoinAndGroupByLeft
- InnerTreeRegionJoin
- InnerTreeRegionJoinAndGroupByRight
- LeftOuterShuffleRegionJoin
- LeftOuterShuffleRegionJoinAndGroupByLeft
- MultisampleAvroGenomicDataset
- MultisampleGenomicDataset
- OutFormatter
- RDDBoundGenericGenomicDataset
- ReferencePartitioner
- RegionJoin
- RightOuterShuffleRegionJoinAndGroupByLeft
- RightOuterTreeRegionJoin
- RightOuterTreeRegionJoinAndGroupByRight
- ShuffleRegionJoin
- SortedIntervalPartitionJoinWithVictims
- TreeRegionJoin
- VictimlessSortedIntervalPartitionJoin

c

org.bdgenomics.adam.ds

# InnerTreeRegionJoin 

###

#### case class InnerTreeRegionJoin[T, U]()(implicit evidence$1: ClassTag[T], evidence$2: ClassTag[U]) extends RegionJoin[T, U, T, U] with TreeRegionJoin[T, U, T, U] with Product with Serializable

Implements an inner region join where the left side of the join is broadcast.

Linear Supertypes
Product, Equals, TreeRegionJoin[T, U, T, U], RegionJoin[T, U, T, U], Serializable, Serializable, AnyRef, Any
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Ordering

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Inherited

1. InnerTreeRegionJoin
2. Product
3. Equals
4. TreeRegionJoin
5. RegionJoin
6. Serializable
7. Serializable
8. AnyRef
9. Any

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Visibility

1. Public
2. All

### Instance Constructors

1.  new InnerTreeRegionJoin()(implicit arg0: ClassTag[T], arg1: ClassTag[U])

### Value Members

1.  final def !=(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  final def asInstanceOf[T0]: T0
   Definition Classes
     Any
5.  def broadcastAndJoin(tree: IntervalArray[ReferenceRegion, T], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(T, U)]
6.  def clone(): AnyRef
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... ) @native() @HotSpotIntrinsicCandidate()
7.  final def eq(arg0: AnyRef): Boolean
   Definition Classes
     AnyRef
8.  final def getClass(): Class[_]
   Definition Classes
     AnyRef → Any
   Annotations
     @native() @HotSpotIntrinsicCandidate()
9.  final def isInstanceOf[T0]: Boolean
   Definition Classes
     Any
10.  def join(broadcastTree: Broadcast[IntervalArray[ReferenceRegion, T]], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(T, U)]
11.  final def ne(arg0: AnyRef): Boolean
    Definition Classes
      AnyRef
12.  final def notify(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
13.  final def notifyAll(): Unit
    Definition Classes
      AnyRef
    Annotations
      @native() @HotSpotIntrinsicCandidate()
14.  def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(T, U)]

    Performs an inner region join between two RDDs.

    Performs an inner region join between two RDDs.

    baseRDD

      The 'left' side of the join

    joinedRDD

      The 'right' side of the join

    returns

      An RDD of pairs (x, y), where x is from baseRDD, y is from joinedRDD, and the region corresponding to x overlaps the region corresponding to y.

    Definition Classes
      InnerTreeRegionJoin → RegionJoin
15.  final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
      AnyRef
16.  final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )
17.  final def wait(arg0: Long): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... ) @native()
18.  final def wait(): Unit
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Deprecated Value Members

1.  def finalize(): Unit
   Attributes
     protected[lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( classOf[java.lang.Throwable] ) @Deprecated
   Deprecated

### Inherited from Product

### Inherited from Equals

### Inherited from TreeRegionJoin[T, U, T, U]

### Inherited from RegionJoin[T, U, T, U]

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped