ADAM_2.12: APIs for Java, Python 1.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package api
  Definition Classes
    adam
-  package java
  Definition Classes
    api
- AlignmentsToAlignmentsConverter
- AlignmentsToCoverageConverter
- AlignmentsToCoverageDatasetConverter
- AlignmentsToFeaturesConverter
- AlignmentsToFeaturesDatasetConverter
- AlignmentsToFragmentsConverter
- AlignmentsToFragmentsDatasetConverter
- AlignmentsToGenotypesConverter
- AlignmentsToGenotypesDatasetConverter
- AlignmentsToReadsConverter
- AlignmentsToReadsDatasetConverter
- AlignmentsToSequencesConverter
- AlignmentsToSequencesDatasetConverter
- AlignmentsToSlicesConverter
- AlignmentsToSlicesDatasetConverter
- AlignmentsToVariantContextConverter
- AlignmentsToVariantsConverter
- AlignmentsToVariantsDatasetConverter
- CoverageToAlignmentsConverter
- CoverageToAlignmentsDatasetConverter
- CoverageToCoverageConverter
- CoverageToFeaturesConverter
- CoverageToFeaturesDatasetConverter
- CoverageToFragmentsConverter
- CoverageToFragmentsDatasetConverter
- CoverageToGenotypesConverter
- CoverageToGenotypesDatasetConverter
- CoverageToReadsConverter
- CoverageToReadsDatasetConverter
- CoverageToSequencesConverter
- CoverageToSequencesDatasetConverter
- CoverageToSlicesConverter
- CoverageToSlicesDatasetConverter
- CoverageToVariantContextConverter
- CoverageToVariantsConverter
- CoverageToVariantsDatasetConverter
- FeaturesToAlignmentsConverter
- FeaturesToAlignmentsDatasetConverter
- FeaturesToCoverageConverter
- FeaturesToCoverageDatasetConverter
- FeaturesToFeatureConverter
- FeaturesToFragmentsConverter
- FeaturesToFragmentsDatasetConverter
- FeaturesToGenotypesConverter
- FeaturesToGenotypesDatasetConverter
- FeaturesToReadsConverter
- FeaturesToReadsDatasetConverter
- FeaturesToSequencesConverter
- FeaturesToSequencesDatasetConverter
- FeaturesToSlicesConverter
- FeaturesToSlicesDatasetConverter
- FeaturesToVariantContextConverter
- FeaturesToVariantsConverter
- FeaturesToVariantsDatasetConverter
- FragmentsToAlignmentsConverter
- FragmentsToAlignmentsDatasetConverter
- FragmentsToCoverageConverter
- FragmentsToCoverageDatasetConverter
- FragmentsToFeaturesConverter
- FragmentsToFeaturesDatasetConverter
- FragmentsToFragmentsConverter
- FragmentsToGenotypesConverter
- FragmentsToGenotypesDatasetConverter
- FragmentsToReadsConverter
- FragmentsToReadsDatasetConverter
- FragmentsToSequencesConverter
- FragmentsToSequencesDatasetConverter
- FragmentsToSlicesConverter
- FragmentsToSlicesDatasetConverter
- FragmentsToVariantContextConverter
- FragmentsToVariantsConverter
- FragmentsToVariantsDatasetConverter
- GenotypesToAlignmentsConverter
- GenotypesToAlignmentsDatasetConverter
- GenotypesToCoverageConverter
- GenotypesToCoverageDatasetConverter
- GenotypesToFeaturesConverter
- GenotypesToFeaturesDatasetConverter
- GenotypesToFragmentsConverter
- GenotypesToFragmentsDatasetConverter
- GenotypesToGenotypesConverter
- GenotypesToReadsConverter
- GenotypesToReadsDatasetConverter
- GenotypesToSequencesConverter
- GenotypesToSequencesDatasetConverter
- GenotypesToSlicesConverter
- GenotypesToSlicesDatasetConverter
- GenotypesToVariantContextConverter
- GenotypesToVariantsConverter
- GenotypesToVariantsDatasetConverter
- JavaADAMContext
- ReadsToAlignmentsConverter
- ReadsToAlignmentsDatasetConverter
- ReadsToCoverageConverter
- ReadsToCoverageDatasetConverter
- ReadsToFeaturesConverter
- ReadsToFeaturesDatasetConverter
- ReadsToFragmentsConverter
- ReadsToFragmentsDatasetConverter
- ReadsToGenotypesConverter
- ReadsToGenotypesDatasetConverter
- ReadsToReadsConverter
- ReadsToSequencesConverter
- ReadsToSequencesDatasetConverter
- ReadsToSlicesConverter
- ReadsToSlicesDatasetConverter
- ReadsToVariantContextsConverter
- ReadsToVariantsConverter
- ReadsToVariantsDatasetConverter
- SequencesToAlignmentsConverter
- SequencesToAlignmentsDatasetConverter
- SequencesToCoverageConverter
- SequencesToCoverageDatasetConverter
- SequencesToFeaturesConverter
- SequencesToFeaturesDatasetConverter
- SequencesToFragmentsConverter
- SequencesToFragmentsDatasetConverter
- SequencesToGenotypesConverter
- SequencesToGenotypesDatasetConverter
- SequencesToReadsConverter
- SequencesToReadsDatasetConverter
- SequencesToSequencesConverter
- SequencesToSlicesConverter
- SequencesToSlicesDatasetConverter
- SequencesToVariantContextsConverter
- SequencesToVariantsConverter
- SequencesToVariantsDatasetConverter
- SlicesToAlignmentsConverter
- SlicesToAlignmentsDatasetConverter
- SlicesToCoverageConverter
- SlicesToCoverageDatasetConverter
- SlicesToFeaturesConverter
- SlicesToFeaturesDatasetConverter
- SlicesToFragmentsConverter
- SlicesToFragmentsDatasetConverter
- SlicesToGenotypesConverter
- SlicesToGenotypesDatasetConverter
- SlicesToReadsConverter
- SlicesToReadsDatasetConverter
- SlicesToSequencesConverter
- SlicesToSequencesDatasetConverter
- SlicesToSlicesConverter
- SlicesToVariantContextsConverter
- SlicesToVariantsConverter
- SlicesToVariantsDatasetConverter
- ToAlignmentDatasetConversion
- ToCoverageDatasetConversion
- ToFeatureDatasetConversion
- ToFragmentDatasetConversion
- ToGenotypeDatasetConversion
- ToReadDatasetConversion
- ToSequenceDatasetConversion
- ToSliceDatasetConversion
- ToVariantContextDatasetConversion
- ToVariantDatasetConversion
- VariantContextsToAlignmentsConverter
- VariantContextsToCoverageConverter
- VariantContextsToFeaturesConverter
- VariantContextsToFragmentsConverter
- VariantContextsToGenotypesConverter
- VariantContextsToReadsConverter
- VariantContextsToSequencesConverter
- VariantContextsToSlicesConverter
- VariantContextsToVariantContextConverter
- VariantContextsToVariantsConverter
- VariantsToAlignmentsConverter
- VariantsToAlignmentsDatasetConverter
- VariantsToCoverageConverter
- VariantsToCoverageDatasetConverter
- VariantsToFeaturesConverter
- VariantsToFeaturesDatasetConverter
- VariantsToFragmentsConverter
- VariantsToFragmentsDatasetConverter
- VariantsToGenotypesConverter
- VariantsToGenotypesDatasetConverter
- VariantsToReadsConverter
- VariantsToReadsDatasetConverter
- VariantsToSequencesConverter
- VariantsToSequencesDatasetConverter
- VariantsToSlicesConverter
- VariantsToSlicesDatasetConverter
- VariantsToVariantContextConverter
- VariantsToVariantsConverter
-  package python
  Definition Classes
    api

p

org.bdgenomics.adam.api

# java 

#### package java

 
Ordering

1. Alphabetic

Visibility

1. Public
2. All

### Type Members

1.  final class AlignmentsToAlignmentsConverter extends Function2[AlignmentDataset, RDD[Alignment], AlignmentDataset]
2.  final class AlignmentsToCoverageConverter extends Function2[AlignmentDataset, RDD[Coverage], CoverageDataset]
3.  final class AlignmentsToCoverageDatasetConverter extends ToCoverageDatasetConversion[Alignment, Alignment, AlignmentDataset]
4.  final class AlignmentsToFeaturesConverter extends Function2[AlignmentDataset, RDD[Feature], FeatureDataset]
5.  final class AlignmentsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Alignment, Alignment, AlignmentDataset]
6.  final class AlignmentsToFragmentsConverter extends Function2[AlignmentDataset, RDD[Fragment], FragmentDataset]
7.  final class AlignmentsToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Alignment, Alignment, AlignmentDataset]
8.  final class AlignmentsToGenotypesConverter extends Function2[AlignmentDataset, RDD[Genotype], GenotypeDataset]
9.  final class AlignmentsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Alignment, Alignment, AlignmentDataset]
10.  final class AlignmentsToReadsConverter extends Function2[AlignmentDataset, RDD[Read], ReadDataset]
11.  final class AlignmentsToReadsDatasetConverter extends ToReadDatasetConversion[Alignment, Alignment, AlignmentDataset]
12.  final class AlignmentsToSequencesConverter extends Function2[AlignmentDataset, RDD[Sequence], SequenceDataset]
13.  final class AlignmentsToSequencesDatasetConverter extends ToSequenceDatasetConversion[Alignment, Alignment, AlignmentDataset]
14.  final class AlignmentsToSlicesConverter extends Function2[AlignmentDataset, RDD[Slice], SliceDataset]
15.  final class AlignmentsToSlicesDatasetConverter extends ToSliceDatasetConversion[Alignment, Alignment, AlignmentDataset]
16.  final class AlignmentsToVariantContextConverter extends Function2[AlignmentDataset, RDD[VariantContext], VariantContextDataset]
17.  final class AlignmentsToVariantsConverter extends Function2[AlignmentDataset, RDD[Variant], VariantDataset]
18.  final class AlignmentsToVariantsDatasetConverter extends ToVariantDatasetConversion[Alignment, Alignment, AlignmentDataset]
19.  final class CoverageToAlignmentsConverter extends Function2[CoverageDataset, RDD[Alignment], AlignmentDataset]
20.  final class CoverageToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Coverage, Coverage, CoverageDataset]
21.  final class CoverageToCoverageConverter extends Function2[CoverageDataset, RDD[Coverage], CoverageDataset]
22.  final class CoverageToFeaturesConverter extends Function2[CoverageDataset, RDD[Feature], FeatureDataset]
23.  final class CoverageToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Coverage, Coverage, CoverageDataset]
24.  final class CoverageToFragmentsConverter extends Function2[CoverageDataset, RDD[Fragment], FragmentDataset]
25.  final class CoverageToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Coverage, Coverage, CoverageDataset]
26.  final class CoverageToGenotypesConverter extends Function2[CoverageDataset, RDD[Genotype], GenotypeDataset]
27.  final class CoverageToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Coverage, Coverage, CoverageDataset]
28.  final class CoverageToReadsConverter extends Function2[CoverageDataset, RDD[Read], ReadDataset]
29.  final class CoverageToReadsDatasetConverter extends ToReadDatasetConversion[Coverage, Coverage, CoverageDataset]
30.  final class CoverageToSequencesConverter extends Function2[CoverageDataset, RDD[Sequence], SequenceDataset]
31.  final class CoverageToSequencesDatasetConverter extends ToSequenceDatasetConversion[Coverage, Coverage, CoverageDataset]
32.  final class CoverageToSlicesConverter extends Function2[CoverageDataset, RDD[Slice], SliceDataset]
33.  final class CoverageToSlicesDatasetConverter extends ToSliceDatasetConversion[Coverage, Coverage, CoverageDataset]
34.  final class CoverageToVariantContextConverter extends Function2[CoverageDataset, RDD[VariantContext], VariantContextDataset]
35.  final class CoverageToVariantsConverter extends Function2[CoverageDataset, RDD[Variant], VariantDataset]
36.  final class CoverageToVariantsDatasetConverter extends ToVariantDatasetConversion[Coverage, Coverage, CoverageDataset]
37.  final class FeaturesToAlignmentsConverter extends Function2[FeatureDataset, RDD[Alignment], AlignmentDataset]
38.  final class FeaturesToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Feature, Feature, FeatureDataset]
39.  final class FeaturesToCoverageConverter extends Function2[FeatureDataset, RDD[Coverage], CoverageDataset]
40.  final class FeaturesToCoverageDatasetConverter extends ToCoverageDatasetConversion[Feature, Feature, FeatureDataset]
41.  final class FeaturesToFeatureConverter extends Function2[FeatureDataset, RDD[Feature], FeatureDataset]
42.  final class FeaturesToFragmentsConverter extends Function2[FeatureDataset, RDD[Fragment], FragmentDataset]
43.  final class FeaturesToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Feature, Feature, FeatureDataset]
44.  final class FeaturesToGenotypesConverter extends Function2[FeatureDataset, RDD[Genotype], GenotypeDataset]
45.  final class FeaturesToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Feature, Feature, FeatureDataset]
46.  final class FeaturesToReadsConverter extends Function2[FeatureDataset, RDD[Read], ReadDataset]
47.  final class FeaturesToReadsDatasetConverter extends ToReadDatasetConversion[Feature, Feature, FeatureDataset]
48.  final class FeaturesToSequencesConverter extends Function2[FeatureDataset, RDD[Sequence], SequenceDataset]
49.  final class FeaturesToSequencesDatasetConverter extends ToSequenceDatasetConversion[Feature, Feature, FeatureDataset]
50.  final class FeaturesToSlicesConverter extends Function2[FeatureDataset, RDD[Slice], SliceDataset]
51.  final class FeaturesToSlicesDatasetConverter extends ToSliceDatasetConversion[Feature, Feature, FeatureDataset]
52.  final class FeaturesToVariantContextConverter extends Function2[FeatureDataset, RDD[VariantContext], VariantContextDataset]
53.  final class FeaturesToVariantsConverter extends Function2[FeatureDataset, RDD[Variant], VariantDataset]
54.  final class FeaturesToVariantsDatasetConverter extends ToVariantDatasetConversion[Feature, Feature, FeatureDataset]
55.  final class FragmentsToAlignmentsConverter extends Function2[FragmentDataset, RDD[Alignment], AlignmentDataset]
56.  final class FragmentsToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Fragment, Fragment, FragmentDataset]
57.  final class FragmentsToCoverageConverter extends Function2[FragmentDataset, RDD[Coverage], CoverageDataset]
58.  final class FragmentsToCoverageDatasetConverter extends ToCoverageDatasetConversion[Fragment, Fragment, FragmentDataset]
59.  final class FragmentsToFeaturesConverter extends Function2[FragmentDataset, RDD[Feature], FeatureDataset]
60.  final class FragmentsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Fragment, Fragment, FragmentDataset]
61.  final class FragmentsToFragmentsConverter extends Function2[FragmentDataset, RDD[Fragment], FragmentDataset]
62.  final class FragmentsToGenotypesConverter extends Function2[FragmentDataset, RDD[Genotype], GenotypeDataset]
63.  final class FragmentsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Fragment, Fragment, FragmentDataset]
64.  final class FragmentsToReadsConverter extends Function2[FragmentDataset, RDD[Read], ReadDataset]
65.  final class FragmentsToReadsDatasetConverter extends ToReadDatasetConversion[Fragment, Fragment, FragmentDataset]
66.  final class FragmentsToSequencesConverter extends Function2[FragmentDataset, RDD[Sequence], SequenceDataset]
67.  final class FragmentsToSequencesDatasetConverter extends ToSequenceDatasetConversion[Fragment, Fragment, FragmentDataset]
68.  final class FragmentsToSlicesConverter extends Function2[FragmentDataset, RDD[Slice], SliceDataset]
69.  final class FragmentsToSlicesDatasetConverter extends ToSliceDatasetConversion[Fragment, Fragment, FragmentDataset]
70.  final class FragmentsToVariantContextConverter extends Function2[FragmentDataset, RDD[VariantContext], VariantContextDataset]
71.  final class FragmentsToVariantsConverter extends Function2[FragmentDataset, RDD[Variant], VariantDataset]
72.  final class FragmentsToVariantsDatasetConverter extends ToVariantDatasetConversion[Fragment, Fragment, FragmentDataset]
73.  final class GenotypesToAlignmentsConverter extends Function2[GenotypeDataset, RDD[Alignment], AlignmentDataset]
74.  final class GenotypesToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Genotype, Genotype, GenotypeDataset]
75.  final class GenotypesToCoverageConverter extends Function2[GenotypeDataset, RDD[Coverage], CoverageDataset]
76.  final class GenotypesToCoverageDatasetConverter extends ToCoverageDatasetConversion[Genotype, Genotype, GenotypeDataset]
77.  final class GenotypesToFeaturesConverter extends Function2[GenotypeDataset, RDD[Feature], FeatureDataset]
78.  final class GenotypesToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Genotype, Genotype, GenotypeDataset]
79.  final class GenotypesToFragmentsConverter extends Function2[GenotypeDataset, RDD[Fragment], FragmentDataset]
80.  final class GenotypesToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Genotype, Genotype, GenotypeDataset]
81.  final class GenotypesToGenotypesConverter extends Function2[GenotypeDataset, RDD[Genotype], GenotypeDataset]
82.  final class GenotypesToReadsConverter extends Function2[GenotypeDataset, RDD[Read], ReadDataset]
83.  final class GenotypesToReadsDatasetConverter extends ToReadDatasetConversion[Genotype, Genotype, GenotypeDataset]
84.  final class GenotypesToSequencesConverter extends Function2[GenotypeDataset, RDD[Sequence], SequenceDataset]
85.  final class GenotypesToSequencesDatasetConverter extends ToSequenceDatasetConversion[Genotype, Genotype, GenotypeDataset]
86.  final class GenotypesToSlicesConverter extends Function2[GenotypeDataset, RDD[Slice], SliceDataset]
87.  final class GenotypesToSlicesDatasetConverter extends ToSliceDatasetConversion[Genotype, Genotype, GenotypeDataset]
88.  final class GenotypesToVariantContextConverter extends Function2[GenotypeDataset, RDD[VariantContext], VariantContextDataset]
89.  final class GenotypesToVariantsConverter extends Function2[GenotypeDataset, RDD[Variant], VariantDataset]
90.  final class GenotypesToVariantsDatasetConverter extends ToVariantDatasetConversion[Genotype, Genotype, GenotypeDataset]
91.  class JavaADAMContext extends Serializable

    The JavaADAMContext provides java-friendly functions on top of ADAMContext.

92.  final class ReadsToAlignmentsConverter extends Function2[ReadDataset, RDD[Alignment], AlignmentDataset]
93.  final class ReadsToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Read, Read, ReadDataset]
94.  final class ReadsToCoverageConverter extends Function2[ReadDataset, RDD[Coverage], CoverageDataset]
95.  final class ReadsToCoverageDatasetConverter extends ToCoverageDatasetConversion[Read, Read, ReadDataset]
96.  final class ReadsToFeaturesConverter extends Function2[ReadDataset, RDD[Feature], FeatureDataset]
97.  final class ReadsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Read, Read, ReadDataset]
98.  final class ReadsToFragmentsConverter extends Function2[ReadDataset, RDD[Fragment], FragmentDataset]
99.  final class ReadsToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Read, Read, ReadDataset]
100.  final class ReadsToGenotypesConverter extends Function2[ReadDataset, RDD[Genotype], GenotypeDataset]
101.  final class ReadsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Read, Read, ReadDataset]
102.  final class ReadsToReadsConverter extends Function2[ReadDataset, RDD[Read], ReadDataset]
103.  final class ReadsToSequencesConverter extends Function2[ReadDataset, RDD[Sequence], SequenceDataset]
104.  final class ReadsToSequencesDatasetConverter extends ToSequenceDatasetConversion[Read, Read, ReadDataset]
105.  final class ReadsToSlicesConverter extends Function2[ReadDataset, RDD[Slice], SliceDataset]
106.  final class ReadsToSlicesDatasetConverter extends ToSliceDatasetConversion[Read, Read, ReadDataset]
107.  final class ReadsToVariantContextsConverter extends Function2[ReadDataset, RDD[VariantContext], VariantContextDataset]
108.  final class ReadsToVariantsConverter extends Function2[ReadDataset, RDD[Variant], VariantDataset]
109.  final class ReadsToVariantsDatasetConverter extends ToVariantDatasetConversion[Read, Read, ReadDataset]
110.  final class SequencesToAlignmentsConverter extends Function2[SequenceDataset, RDD[Alignment], AlignmentDataset]
111.  final class SequencesToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Sequence, Sequence, SequenceDataset]
112.  final class SequencesToCoverageConverter extends Function2[SequenceDataset, RDD[Coverage], CoverageDataset]
113.  final class SequencesToCoverageDatasetConverter extends ToCoverageDatasetConversion[Sequence, Sequence, SequenceDataset]
114.  final class SequencesToFeaturesConverter extends Function2[SequenceDataset, RDD[Feature], FeatureDataset]
115.  final class SequencesToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Sequence, Sequence, SequenceDataset]
116.  final class SequencesToFragmentsConverter extends Function2[SequenceDataset, RDD[Fragment], FragmentDataset]
117.  final class SequencesToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Sequence, Sequence, SequenceDataset]
118.  final class SequencesToGenotypesConverter extends Function2[SequenceDataset, RDD[Genotype], GenotypeDataset]
119.  final class SequencesToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Sequence, Sequence, SequenceDataset]
120.  final class SequencesToReadsConverter extends Function2[SequenceDataset, RDD[Read], ReadDataset]
121.  final class SequencesToReadsDatasetConverter extends ToReadDatasetConversion[Sequence, Sequence, SequenceDataset]
122.  final class SequencesToSequencesConverter extends Function2[SequenceDataset, RDD[Sequence], SequenceDataset]
123.  final class SequencesToSlicesConverter extends Function2[SequenceDataset, RDD[Slice], SliceDataset]
124.  final class SequencesToSlicesDatasetConverter extends ToSliceDatasetConversion[Sequence, Sequence, SequenceDataset]
125.  final class SequencesToVariantContextsConverter extends Function2[SequenceDataset, RDD[VariantContext], VariantContextDataset]
126.  final class SequencesToVariantsConverter extends Function2[SequenceDataset, RDD[Variant], VariantDataset]
127.  final class SequencesToVariantsDatasetConverter extends ToVariantDatasetConversion[Sequence, Sequence, SequenceDataset]
128.  final class SlicesToAlignmentsConverter extends Function2[SliceDataset, RDD[Alignment], AlignmentDataset]
129.  final class SlicesToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Slice, Slice, SliceDataset]
130.  final class SlicesToCoverageConverter extends Function2[SliceDataset, RDD[Coverage], CoverageDataset]
131.  final class SlicesToCoverageDatasetConverter extends ToCoverageDatasetConversion[Slice, Slice, SliceDataset]
132.  final class SlicesToFeaturesConverter extends Function2[SliceDataset, RDD[Feature], FeatureDataset]
133.  final class SlicesToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Slice, Slice, SliceDataset]
134.  final class SlicesToFragmentsConverter extends Function2[SliceDataset, RDD[Fragment], FragmentDataset]
135.  final class SlicesToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Slice, Slice, SliceDataset]
136.  final class SlicesToGenotypesConverter extends Function2[SliceDataset, RDD[Genotype], GenotypeDataset]
137.  final class SlicesToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Slice, Slice, SliceDataset]
138.  final class SlicesToReadsConverter extends Function2[SliceDataset, RDD[Read], ReadDataset]
139.  final class SlicesToReadsDatasetConverter extends ToReadDatasetConversion[Slice, Slice, SliceDataset]
140.  final class SlicesToSequencesConverter extends Function2[SliceDataset, RDD[Sequence], SequenceDataset]
141.  final class SlicesToSequencesDatasetConverter extends ToSequenceDatasetConversion[Slice, Slice, SliceDataset]
142.  final class SlicesToSlicesConverter extends Function2[SliceDataset, RDD[Slice], SliceDataset]
143.  final class SlicesToVariantContextsConverter extends Function2[SliceDataset, RDD[VariantContext], VariantContextDataset]
144.  final class SlicesToVariantsConverter extends Function2[SliceDataset, RDD[Variant], VariantDataset]
145.  final class SlicesToVariantsDatasetConverter extends ToVariantDatasetConversion[Slice, Slice, SliceDataset]
146.  trait ToAlignmentDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Alignment, Alignment, AlignmentDataset]
147.  trait ToCoverageDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Coverage, Coverage, CoverageDataset]
148.  trait ToFeatureDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Feature, Feature, FeatureDataset]
149.  trait ToFragmentDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Fragment, Fragment, FragmentDataset]
150.  trait ToGenotypeDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Genotype, Genotype, GenotypeDataset]
151.  trait ToReadDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Read, Read, ReadDataset]
152.  trait ToSequenceDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Sequence, Sequence, SequenceDataset]
153.  trait ToSliceDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Slice, Slice, SliceDataset]
154.  trait ToVariantContextDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, VariantContext, VariantContext, VariantContextDataset]
155.  trait ToVariantDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Variant, Variant, VariantDataset]
156.  final class VariantContextsToAlignmentsConverter extends Function2[VariantContextDataset, RDD[Alignment], AlignmentDataset]
157.  final class VariantContextsToCoverageConverter extends Function2[VariantContextDataset, RDD[Coverage], CoverageDataset]
158.  final class VariantContextsToFeaturesConverter extends Function2[VariantContextDataset, RDD[Feature], FeatureDataset]
159.  final class VariantContextsToFragmentsConverter extends Function2[VariantContextDataset, RDD[Fragment], FragmentDataset]
160.  final class VariantContextsToGenotypesConverter extends Function2[VariantContextDataset, RDD[Genotype], GenotypeDataset]
161.  final class VariantContextsToReadsConverter extends Function2[VariantContextDataset, RDD[Read], ReadDataset]
162.  final class VariantContextsToSequencesConverter extends Function2[VariantContextDataset, RDD[Sequence], SequenceDataset]
163.  final class VariantContextsToSlicesConverter extends Function2[VariantContextDataset, RDD[Slice], SliceDataset]
164.  final class VariantContextsToVariantContextConverter extends Function2[VariantContextDataset, RDD[VariantContext], VariantContextDataset]
165.  final class VariantContextsToVariantsConverter extends Function2[VariantContextDataset, RDD[Variant], VariantDataset]
166.  final class VariantsToAlignmentsConverter extends Function2[VariantDataset, RDD[Alignment], AlignmentDataset]
167.  final class VariantsToAlignmentsDatasetConverter extends ToAlignmentDatasetConversion[Variant, Variant, VariantDataset]
168.  final class VariantsToCoverageConverter extends Function2[VariantDataset, RDD[Coverage], CoverageDataset]
169.  final class VariantsToCoverageDatasetConverter extends ToCoverageDatasetConversion[Variant, Variant, VariantDataset]
170.  final class VariantsToFeaturesConverter extends Function2[VariantDataset, RDD[Feature], FeatureDataset]
171.  final class VariantsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Variant, Variant, VariantDataset]
172.  final class VariantsToFragmentsConverter extends Function2[VariantDataset, RDD[Fragment], FragmentDataset]
173.  final class VariantsToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Variant, Variant, VariantDataset]
174.  final class VariantsToGenotypesConverter extends Function2[VariantDataset, RDD[Genotype], GenotypeDataset]
175.  final class VariantsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Variant, Variant, VariantDataset]
176.  final class VariantsToReadsConverter extends Function2[VariantDataset, RDD[Read], ReadDataset]
177.  final class VariantsToReadsDatasetConverter extends ToReadDatasetConversion[Variant, Variant, VariantDataset]
178.  final class VariantsToSequencesConverter extends Function2[VariantDataset, RDD[Sequence], SequenceDataset]
179.  final class VariantsToSequencesDatasetConverter extends ToSequenceDatasetConversion[Variant, Variant, VariantDataset]
180.  final class VariantsToSlicesConverter extends Function2[VariantDataset, RDD[Slice], SliceDataset]
181.  final class VariantsToSlicesDatasetConverter extends ToSliceDatasetConversion[Variant, Variant, VariantDataset]
182.  final class VariantsToVariantContextConverter extends Function2[VariantDataset, RDD[VariantContext], VariantContextDataset]
183.  final class VariantsToVariantsConverter extends Function2[VariantDataset, RDD[Variant], VariantDataset]

### Value Members

1.  object JavaADAMContext extends Serializable

### Ungrouped