ADAM_2.12: Core 1.0 API < Back
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# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package variant
  Definition Classes
    ds
- ADAMVCFOutputFormat
- DatasetBoundGenotypeDataset
- DatasetBoundVariantContextDataset
- DatasetBoundVariantDataset
- GenotypeDataset
- ParquetUnboundGenotypeDataset
- ParquetUnboundVariantDataset
- RDDBoundGenotypeDataset
- RDDBoundVariantContextDataset
- RDDBoundVariantDataset
- VCFInFormatter
- VCFOutFormatter
- VariantContextDataset
- VariantDataset

o

org.bdgenomics.adam.ds.variant

# GenotypeDataset 

###
Companion class GenotypeDataset

#### object GenotypeDataset extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
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1. GenotypeDataset
2. Serializable
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### Value Members

1.  final def !=(arg0: Any): Boolean
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     AnyRef → Any
2.  final def ##(): Int
   Definition Classes
     AnyRef → Any
3.  final def ==(arg0: Any): Boolean
   Definition Classes
     AnyRef → Any
4.  def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   Builds a GenotypeDataset from a Dataset.

   Builds a GenotypeDataset from a Dataset.

   ds

     The underlying Genotype Dataset.

   sequences

     The sequence dictionary for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new GenotypeDataset.

5.  def apply(ds: Dataset[Genotype], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   Builds a GenotypeDataset from a Dataset.

   Builds a GenotypeDataset from a Dataset.

   ds

     The underlying Genotype Dataset.

   references

     The references for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new GenotypeDataset.

6.  def apply(ds: Dataset[Genotype]): GenotypeDataset

   Builds a GenotypeDataset from a Dataset.

   Builds a GenotypeDataset from a Dataset.

   ds

     The underlying Genotype Dataset.

   returns

     A new GenotypeDataset.

7.  def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeDataset

   Builds a GenotypeDataset from an RDD.

   Builds a GenotypeDataset from an RDD.

   rdd

     The underlying Genotype RDD.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new GenotypeDataset.

8.  def apply(rdd: RDD[Genotype], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   Builds a GenotypeDataset from an RDD.

   Builds a GenotypeDataset from an RDD.

   rdd

     The underlying Genotype RDD.

   references

     The references for the genomic dataset.

   samples

     The samples for the genomic dataset.

   headerLines

     The header lines for the genomic dataset.

   returns

     A new GenotypeDataset.

9.  final def asInstanceOf[T0]: T0
   Definition Classes
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10.  def clone(): AnyRef
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13.  def finalize(): Unit
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18.  final def notify(): Unit
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19.  final def notifyAll(): Unit
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### Inherited from Serializable

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