ADAM_2.12: Core 1.0 API < Back
 

# Packages

-  package root
  Definition Classes
    root
-  package org
  Definition Classes
    root
-  package bdgenomics
  Definition Classes
    org
-  package adam
  Definition Classes
    bdgenomics
-  package ds
  Definition Classes
    adam
-  package feature
  Definition Classes
    ds
-  package fragment
  Definition Classes
    ds
-  package read
  Definition Classes
    ds
-  package sequence
  Definition Classes
    ds
- DatasetBoundSequenceDataset
- DatasetBoundSliceDataset
- FASTAInFormatter
- ParquetUnboundSequenceDataset
- ParquetUnboundSliceDataset
- RDDBoundSequenceDataset
- RDDBoundSliceDataset
- SequenceDataset
- SliceDataset
-  package variant
  Definition Classes
    ds

p

org.bdgenomics.adam.ds

# sequence 

#### package sequence

 
Ordering

1. Alphabetic

Visibility

1. Public
2. All

### Type Members

1.  case class DatasetBoundSequenceDataset extends SequenceDataset with DatasetBoundGenomicDataset[Sequence, Sequence, SequenceDataset] with Product with Serializable
2.  case class DatasetBoundSliceDataset extends SliceDataset with DatasetBoundGenomicDataset[Slice, Slice, SliceDataset] with Product with Serializable
3.  class FASTAInFormatter extends InFormatter[Sequence, Sequence, SequenceDataset, FASTAInFormatter]
4.  case class ParquetUnboundSequenceDataset extends SequenceDataset with Product with Serializable
5.  case class ParquetUnboundSliceDataset extends SliceDataset with Product with Serializable
6.  case class RDDBoundSequenceDataset extends SequenceDataset with Product with Serializable
7.  case class RDDBoundSliceDataset extends SliceDataset with Product with Serializable
8.  sealed abstract class SequenceDataset extends AvroGenomicDataset[Sequence, Sequence, SequenceDataset] with MultisampleGenomicDataset[Sequence, Sequence, SequenceDataset]
9.  sealed abstract class SliceDataset extends AvroGenomicDataset[Slice, Slice, SliceDataset] with MultisampleGenomicDataset[Slice, Slice, SliceDataset]

### Value Members

1.  object FASTAInFormatter extends InFormatterCompanion[Sequence, Sequence, SequenceDataset, FASTAInFormatter] with Serializable

   InFormatter companion that creates an InFormatter that writes FASTA.

2.  object SequenceDataset
3.  object SliceDataset

### Ungrouped