ADAM_2.12: Core 1.0 API < Back
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# Packages

-  package root
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    root
-  package org
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    root
-  package bdgenomics
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    org
-  package adam
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    bdgenomics
-  package ds
  Definition Classes
    adam
-  package read
  Definition Classes
    ds
- ADAMBAMOutputFormat
- ADAMBAMOutputFormatHeaderLess
- ADAMCRAMOutputFormat
- ADAMCRAMOutputFormatHeaderLess
- ADAMSAMOutputFormat
- ADAMSAMOutputFormatHeaderLess
- AlignmentDataset
- AnySAMInFormatter
- AnySAMInFormatterCompanion
- AnySAMOutFormatter
- BAMInFormatter
- DatasetBoundAlignmentDataset
- DatasetBoundReadDataset
- FASTQInFormatter
- IncorrectMDTagException
- ParquetUnboundAlignmentDataset
- ParquetUnboundReadDataset
- QualityScoreBin
- RDDBoundAlignmentDataset
- RDDBoundReadDataset
- ReadDataset
- ReferencePositionPairSerializer
- SAMInFormatter
- SingleReadBucketSerializer

o

org.bdgenomics.adam.ds.read

# ReadDataset 

###
Companion class ReadDataset

#### object ReadDataset

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1.  final def !=(arg0: Any): Boolean
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2.  final def ##(): Int
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3.  final def ==(arg0: Any): Boolean
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4.  def apply(rdd: RDD[Read], references: SequenceDictionary, samples: Iterable[Sample]): ReadDataset

   A genomic dataset that wraps an RDD of Read data.

   A genomic dataset that wraps an RDD of Read data.

   rdd

     The underlying Read RDD to build from.

   references

     The reference genome these data are aligned to.

   samples

     Samples for these reads.

   returns

     Returns a new ReadDataset.

5.  def apply(rdd: RDD[Read]): ReadDataset

   A genomic dataset that wraps an RDD of Read data.

   A genomic dataset that wraps an RDD of Read data.

   rdd

     The underlying Read RDD to build from.

   returns

     Returns a new ReadDataset.

6.  def apply(ds: Dataset[Read], references: SequenceDictionary, samples: Iterable[Sample]): ReadDataset

   A genomic dataset that wraps a dataset of Read data.

   A genomic dataset that wraps a dataset of Read data.

   ds

     A Dataset of genomic Reads.

   references

     The reference genome these data are aligned to.

   samples

     Samples for these reads.

7.  def apply(ds: Dataset[Read]): ReadDataset

   A genomic dataset that wraps a dataset of Read data.

   A genomic dataset that wraps a dataset of Read data.

   ds

     A Dataset of genomic Reads.

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