N
Base
NAME_SIZE_SIZE
TwoBitFile
NarrowPeakFeature
models
NarrowPeakParser
features
NonoverlappingRegions
rdd
NormalizationUtils
util
NucleotideContigFragmentField
projections
NucleotideContigFragmentRDDFunctions
contig
NumericSequence
TagType
nBlocks
TwoBitRecord
name
BaseQualityScores BucketComparisons CombinedComparisons DupeMismatch MapQualityScores MappedPosition OverMatched ProgramRecord SequenceRecord DecadentRead
named1
ComparisonTraversalEngine
named2
ComparisonTraversalEngine
names
Gene Transcript GenomicPositionPartitioner
negativeStrand
ReferencePositionWithOrientation ReferenceRegionWithOrientation
newJob
HadoopUtil
noCallCount
GenotypesSummaryCounts
nonReferenceConcordance
ConcordanceTable
nonReferenceDiscrepancy
ConcordanceTable
nonReferenceSensitivity
ConcordanceTable
normalization
rdd
numAlignmentBlocks
RichCigar
numBins
GenomeBins
numElements
RichCigar
numPartitions
GenomicPositionPartitioner GenomicRegionPartitioner
numParts
GenomicPositionPartitioner
numReads
Pileup
numSeq
TwoBitFile
numTracks
OrderedTrackedLayout TrackedLayout
numberOfFragmentsInContig
NucleotideContigFragmentField
numberOfPositionsToShiftIndel
NormalizationUtils