WrapperFilter
BucketComparisons
WriteADAMRecord
Timers
WriteBAMRecord
Timers
WriteSAMRecord
Timers
width
Interval ReferenceRegion ReferenceRegionWithOrientation
window
Coverage
withDefaultZeroCounts
GenotypesSummaryCounts
withMateMappedToDiffChromosome
FlagStatMetrics
withMateMappedToDiffChromosomeMapQ5
FlagStatMetrics
withSelfAndMateMapped
FlagStatMetrics
write
ReadBucketSerializer ReferencePositionPairSerializer ReferencePositionSerializer ReferencePositionWithOrientationSerializer ReferenceRegionSerializer SingleReadBucketSerializer TargetSetSerializer ZippedTargetSetSerializer AvroSerializer
writeArray
ReadBucketSerializer SingleReadBucketSerializer
writeOptionalReferencePos
ReferencePositionPairSerializer
writer
AvroSerializer