EmptyAccessControl
plugins
EqualityFilter
BucketComparisons
Exon
models
Extractable
models
empiricalErrorProbability
Observation
empiricalQuality
Observation
empty
DuplicateMetrics
Aggregate
Observation
emptyFailedQuality
FlagStatMetrics
emptyPassedQuality
FlagStatMetrics
enableVisitLogging
BaseQualityRecalibration
encoder
AvroSerializer
encoding
IntervalListReader
end
ReferenceRegion
ReferenceRegionWithOrientation
AlignmentRecordField
FeatureField
MdTag
endpoints
NonoverlappingRegions
ensemblGeneId
DatabaseVariantAnnotationField
ensemblTranscriptIds
DatabaseVariantAnnotationField
ensureAligned
DecadentRead
entries
ObservationTable
equals
RecordGroup
SequenceDictionary
SequenceRecord
CovariateKey
CovariateSpace
CycleCovariate
DinucCovariate
Observation
RichVariant
MdTag
QualityScore
errorProbability
QualityScore
errorProbabilityToPhred
PhredUtils
eventLength
DeletionEvent
MatchEvent
MismatchEvent
eventOffset
DeletionEvent
MatchEvent
MismatchEvent
exonId
Exon
exons
Transcript
expectedMismatches
Aggregate
extraTables
RecalibrationTable
extract
TwoBitFile
extractCodingSequence
Transcript
extractLengthMap
GenomicPositionPartitioner
extractSequence
BlockExtractable
Extractable
extractSplicedmRNASequence
Transcript
extractTranscribedRNASequence
Transcript
extras
CovariateKey
CovariateSpace