org.bdgenomics.adam.cli

Bam2ADAM

class Bam2ADAM extends ADAMCommand

Linear Supertypes
ADAMCommand, Runnable, AnyRef, Any
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Inherited
  1. Bam2ADAM
  2. ADAMCommand
  3. Runnable
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Instance Constructors

  1. new Bam2ADAM(args: Bam2ADAMArgs)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. val blockingQueue: LinkedBlockingQueue[Option[(SAMRecord, SequenceDictionary, RecordGroupDictionary)]]

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val companion: Bam2ADAM.type

    Definition Classes
    Bam2ADAM → ADAMCommand

  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  12. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  16. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  17. final def notify(): Unit

    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  19. def run(): Unit

    Definition Classes
    Bam2ADAM → Runnable

  20. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  21. def toString(): String

    Definition Classes
    AnyRef → Any

  22. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  24. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. val writerThreads: List[Thread]

Inherited from ADAMCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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