org.bdgenomics.adam.cli

Reads2RefArgs

class Reads2RefArgs extends Args4jBase with ParquetSaveArgs

Linear Supertypes
ParquetSaveArgs, ADAMSaveArgs, ParquetArgs, ADAMParquetArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Reads2RefArgs
  2. ParquetSaveArgs
  3. ADAMSaveArgs
  4. ParquetArgs
  5. ADAMParquetArgs
  6. Args4jBase
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Reads2RefArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. var blockSize: Int

    Definition Classes
    ParquetArgs → ADAMParquetArgs

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ADAMParquetArgs

  10. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ADAMParquetArgs

  11. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  15. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  16. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  17. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  18. var logLevel: String

    Definition Classes
    ParquetArgs

  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  20. var nonPrimary: Boolean

  21. final def notify(): Unit

    Definition Classes
    AnyRef

  22. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  23. var outputPath: String

    Definition Classes
    Reads2RefArgs → ADAMSaveArgs

  24. var pageSize: Int

    Definition Classes
    ParquetArgs → ADAMParquetArgs

  25. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  26. var readInput: String

  27. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  28. def toString(): String

    Definition Classes
    AnyRef → Any

  29. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  30. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetSaveArgs

Inherited from ADAMSaveArgs

Inherited from ParquetArgs

Inherited from ADAMParquetArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped