Value Members
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final
def
!=(arg0: AnyRef): Boolean
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: AnyRef): Boolean
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final
def
==(arg0: Any): Boolean
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def
apply(cmdLine: Array[String]): ADAMCommand
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final
def
asInstanceOf[T0]: T0
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val
base: Int
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def
clone(): AnyRef
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val
commandDescription: String
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val
commandName: String
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final
def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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final
def
getClass(): Class[_]
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def
hashCode(): Int
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val
height: Int
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var
inputPath: String
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final
def
isInstanceOf[T0]: Boolean
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def
main(cmdLine: Array[String]): Unit
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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def
printJsonFreq(array: Array[AlignmentRecord], region: ReferenceRegion): List[FreqJson]
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def
printTrackJson(layout: OrderedTrackedLayout[AlignmentRecord]): List[TrackJson]
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def
printVariationJson(layout: OrderedTrackedLayout[Genotype]): List[VariationJson]
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var
reads: RDD[AlignmentRecord]
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var
refName: String
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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val
trackHeight: Int
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var
variants: RDD[Genotype]
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
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val
width: Int
Inherited from AnyRef
Inherited from Any
