org.bdgenomics.adam.metrics.filters

GeneratorFilter

trait GeneratorFilter[+T] extends Serializable

Used by FindReads, a GeneratorFilter is a predicate on values, which also wraps a particular BucketComparisons object (the thing that produces those values).

BucketComparisons will generate a Seq[T] for each ReadBucket it's given -- FindReads then filters the ReadBuckets based on whether any element of the Seq[T] passes the GeneratorFilter (this allows us to handle both read-level and base-level comparison metrics and filters, e.g. 'find all matched ReadBuckets for which some base quality score doesn't match').

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Known Subclasses
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. GeneratorFilter
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Abstract Value Members

  1. abstract def comparison: BucketComparisons[T]

  2. abstract def passesFilter(value: Any): Boolean

Concrete Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  9. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  12. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  13. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  14. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  15. final def notify(): Unit

    Definition Classes
    AnyRef
  16. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  18. def toString(): String

    Definition Classes
    AnyRef → Any
  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped