ReferenceRegionWithOrientation

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1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. def apply(referenceName: String, start: Long, end: Long, negativeStrand: Boolean): ReferenceRegionWithOrientation

   Builds an oriented reference region from the individual parameters

   Builds an oriented reference region from the individual parameters

   referenceName

   The name of the sequence (chromosome) in the reference genome

   start

   The 0-based residue-coordinate for the start of the region

   end

   The 0-based residue-coordinate for the first residue after the start which is not in the region -- i.e. [start, end) define a 0-based half-open interval.

   negativeStrand

   Boolean flag as to whether the region is on the forward or reverse strand of the reference region.

7. final def asInstanceOf[T0]: T0

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8. def clone(): AnyRef

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9. final def eq(arg0: AnyRef): Boolean

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10. def equals(arg0: Any): Boolean

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11. def finalize(): Unit

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12. final def getClass(): Class[_]

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13. def hashCode(): Int

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14. final def isInstanceOf[T0]: Boolean

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15. final def ne(arg0: AnyRef): Boolean

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16. final def notify(): Unit

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17. final def notifyAll(): Unit

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18. final def synchronized[T0](arg0: ⇒ T0): T0

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19. def toString(): String

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20. final def wait(): Unit

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21. final def wait(arg0: Long, arg1: Int): Unit

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22. final def wait(arg0: Long): Unit

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