org.bdgenomics.adam.rdd.variation

GenotypesSummary

case class GenotypesSummary(perSampleStatistics: StatisticsMap, singletonCount: Long, distinctVariantCount: Long) extends Product with Serializable

Summary statistics for a set of genotypes.

perSampleStatistics

A map from sample id -> GenotypesSummaryCounts for that sample

singletonCount

Number of variants that are called in exactly one sample.

distinctVariantCount

Number of distinct variants that are called at least once.

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Instance Constructors

  1. new GenotypesSummary(perSampleStatistics: StatisticsMap, singletonCount: Long, distinctVariantCount: Long)

    perSampleStatistics

    A map from sample id -> GenotypesSummaryCounts for that sample

    singletonCount

    Number of variants that are called in exactly one sample.

    distinctVariantCount

    Number of distinct variants that are called at least once.

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
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  2. final def !=(arg0: Any): Boolean

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  3. final def ##(): Int

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  4. final def ==(arg0: AnyRef): Boolean

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  5. final def ==(arg0: Any): Boolean

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  6. lazy val aggregateStatistics: GenotypesSummaryCounts

  7. final def asInstanceOf[T0]: T0

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  8. def clone(): AnyRef

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    protected[java.lang]
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    @throws( ... )

  9. val distinctVariantCount: Long

    Number of distinct variants that are called at least once.

  10. final def eq(arg0: AnyRef): Boolean

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  11. def finalize(): Unit

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    protected[java.lang]
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  12. final def getClass(): Class[_]

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  13. final def isInstanceOf[T0]: Boolean

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  14. final def ne(arg0: AnyRef): Boolean

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  15. final def notify(): Unit

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  16. final def notifyAll(): Unit

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  17. val perSampleStatistics: StatisticsMap

    A map from sample id -> GenotypesSummaryCounts for that sample

  18. val singletonCount: Long

    Number of variants that are called in exactly one sample.

  19. final def synchronized[T0](arg0: ⇒ T0): T0

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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