org.bdgenomics.adam.rdd.variation

GenotypesSummaryCounts

object GenotypesSummaryCounts extends Serializable

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Type Members

  1. type GenotypeAlleleCounts = Map[List[GenotypeAllele], Long]

  2. case class ReferenceAndAlternate(reference: String, alternate: String) extends Product with Serializable

  3. type VariantCounts = Map[ReferenceAndAlternate, Long]

Value Members

  1. final def !=(arg0: AnyRef): Boolean

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  2. final def !=(arg0: Any): Boolean

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  3. final def ##(): Int

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  4. final def ==(arg0: AnyRef): Boolean

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  5. final def ==(arg0: Any): Boolean

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  6. def apply(genotype: Genotype): GenotypesSummaryCounts

    Factory for a GenotypesSummaryCounts that counts a single Genotype.

  7. def apply(counts: GenotypesSummaryCounts): Unit

  8. def apply(): GenotypesSummaryCounts

    Factory for an empty GenotypesSummaryCounts.

  9. final def asInstanceOf[T0]: T0

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  10. def clone(): AnyRef

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    protected[java.lang]
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  11. final def eq(arg0: AnyRef): Boolean

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  12. def equals(arg0: Any): Boolean

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  13. def finalize(): Unit

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  14. final def getClass(): Class[_]

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  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

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  17. final def ne(arg0: AnyRef): Boolean

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  18. final def notify(): Unit

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  19. final def notifyAll(): Unit

    Definition Classes
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  20. val simpleNucleotides: List[String]

  21. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  22. def toString(): String

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  23. val transitions: List[ReferenceAndAlternate]

  24. val transversions: List[ReferenceAndAlternate]

  25. final def wait(): Unit

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  26. final def wait(arg0: Long, arg1: Int): Unit

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  27. final def wait(arg0: Long): Unit

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