WrapperFilter
BucketComparisons
WriteADAMRecord
Timers
WriteBAMRecord
Timers
WriteSAMRecord
Timers
width
Interval
ReferenceRegion
ReferenceRegionWithOrientation
window
Coverage
withDefaultZeroCounts
GenotypesSummaryCounts
withMateMappedToDiffChromosome
FlagStatMetrics
withMateMappedToDiffChromosomeMapQ5
FlagStatMetrics
withSelfAndMateMapped
FlagStatMetrics
write
ReadBucketSerializer
ReferencePositionPairSerializer
ReferencePositionSerializer
ReferencePositionWithOrientationSerializer
ReferenceRegionSerializer
SingleReadBucketSerializer
TargetSetSerializer
ZippedTargetSetSerializer
AvroSerializer
writeArray
ReadBucketSerializer
SingleReadBucketSerializer
writeOptionalReferencePos
ReferencePositionPairSerializer
writer
AvroSerializer