Value Members
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final
def
!=(arg0: AnyRef): Boolean
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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def
==(arg0: AnyRef): Boolean
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def
==(arg0: Any): Boolean
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def
apply(cmdLine: Array[String]): WigFix2Bed
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def
asInstanceOf[T0]: T0
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def
clone(): AnyRef
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val
commandDescription: String
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val
commandName: String
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val
declPattern: Regex
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def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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val
featPattern: Regex
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def
finalize(): Unit
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def
getClass(): Class[_]
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def
hashCode(): Int
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def
isInstanceOf[T0]: Boolean
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def
main(cmdLine: Array[String]): Unit
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def
ne(arg0: AnyRef): Boolean
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def
notify(): Unit
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def
notifyAll(): Unit
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def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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def
wait(): Unit
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def
wait(arg0: Long, arg1: Int): Unit
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def
wait(arg0: Long): Unit
Inherited from AnyRef
Inherited from Any
WigFix2Bed (accessible as the command "wigfix2bed" through the CLI) takes fixed wiggle file and converts it to a BED formatted file. The wiggle file is a text based format that implements run-length encoding, without any guarantees where the sync markers are. This makes it difficult to use as a "splittable" format, and necessitates processing the file locally.