org.bdgenomics.adam

predicates

package predicates

Visibility
  1. Public
  2. All

Type Members

  1. trait ADAMPredicate[T] extends UnboundRecordFilter

    ADAMPredicate: Classes derived from ADAMPredicate can be used to set ParquetInputFormat.

  2. case class FieldCondition[T](fieldName: String, filter: (T) ⇒ Boolean)(implicit converter: ColumnReaderInput[T]) extends Predicate with Product with Serializable

  3. class GenotypeRecordPASSPredicate extends ADAMPredicate[Genotype]

  4. class HighQualityReadPredicate extends ADAMPredicate[AlignmentRecord]

  5. class LocusPredicate extends UnboundRecordFilter

  6. class RecordCondition[T] extends Serializable

    A RecordCondition is a filter on any Avro defined records and contains an UnboundRecordFilter that can be used for predicate pushdown with Parquet stored files

  7. class UniqueMappedReadPredicate extends ADAMPredicate[AlignmentRecord]

Value Members

  1. object AlignmentRecordConditions

  2. object ColumnReaderInput extends Serializable

  3. object FieldCondition extends Serializable

  4. object GenotypeConditions

  5. object PredicateUtils

  6. object RecordCondition extends Serializable

Ungrouped