org.bdgenomics.adam.rdd.read.recalibration

ObservationTable

class ObservationTable extends Serializable

Table containing the empirical frequency of mismatches for each set of covariate values.

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Instance Constructors

  1. new ObservationTable(space: CovariateSpace, entries: Map[CovariateKey, Observation])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
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  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
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  6. def aggregate[K](func: (CovariateKey, Observation) ⇒ K): Map[K, Aggregate]

  7. final def asInstanceOf[T0]: T0

    Definition Classes
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  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
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    @throws( ... )

  9. def csvHeader: Seq[String]

  10. val entries: Map[CovariateKey, Observation]

  11. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  13. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  14. final def getClass(): Class[_]

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  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. final def notify(): Unit

    Definition Classes
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  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  20. val space: CovariateSpace

  21. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  22. def toCSV: String

  23. def toString(): String

    Definition Classes
    ObservationTable → AnyRef → Any

  24. final def wait(): Unit

    Definition Classes
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    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  26. final def wait(arg0: Long): Unit

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