object
SequenceUtils
Value Members
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final
def
!=(arg0: AnyRef): Boolean
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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def
==(arg0: AnyRef): Boolean
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def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
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def
clone(): AnyRef
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def
complement(c: Char): Char
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def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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def
getClass(): Class[_]
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def
hashCode(): Int
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def
isInstanceOf[T0]: Boolean
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def
ne(arg0: AnyRef): Boolean
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def
notify(): Unit
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def
notifyAll(): Unit
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def
reverseComplement(dna: String): String
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def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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def
wait(): Unit
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def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
Inherited from AnyRef
Inherited from Any
This is a hack, and should be replaced! See Issue #410 -> https://github.com/bigdatagenomics/adam/issues/410
Basically, I introduced this as a set of helper functions for suppporting the Gene/Transcript model work, which required the ability to extract transcript sequences from a chromosomal sequence.
But this should be replaced with a proper "Alphabet" object. --TWD