#!/usr/bin/env bash
#
# Licensed to Big Data Genomics (BDG) under one
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# distributed with this work for additional information
# regarding copyright ownership.  The BDG licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License.  You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
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#

set -e

# Figure out where ADAM is installed
ADAM_REPO="$(cd `dirname $0`/..; pwd)"

CLASSPATH="$(. "$ADAM_REPO"/bin/compute-adam-classpath.sh)"

# list of jars to ship with spark; trim off the first from the CLASSPATH --> this is /etc
# TODO: brittle? assumes appassembler always puts the $BASE/etc first and the CLI jar last
ADAM_JARS="$(echo "$CLASSPATH" | tr ":" "\n" | tail -n +2 | perl -pe 's/\n/,/ unless eof' )"

echo "$ADAM_JARS"
