EmptyAccessControl
plugins
Exon
models
Extractable
models
ExtrasTables
recalibration
empiricalErrorProbability
Observation
empiricalQuality
Observation
empty
DuplicateMetrics Aggregate Observation
emptyFailedQuality
FlagStatMetrics
emptyPassedQuality
FlagStatMetrics
enableVisitLogging
BaseQualityRecalibration
encoder
AvroSerializer
encoding
IntervalListReader
end
ReferenceRegion AlignmentRecordField FeatureField VariantField MdTag
ensemblGeneId
DatabaseVariantAnnotationField
ensemblTranscriptIds
DatabaseVariantAnnotationField
ensureAligned
DecadentRead
entries
ObservationTable
equals
RecordGroup SequenceDictionary SequenceRecord CovariateKey CovariateSpace CycleCovariate DinucCovariate Observation RichVariant MdTag QualityScore
errorProbability
QualityScore
errorProbabilityToPhred
PhredUtils
exonId
Exon
exons
Transcript
expectedMismatches
Aggregate
extract
ReferenceFile TwoBitFile
extractCodingSequence
Transcript
extractLengthMap
GenomicPositionPartitioner
extractSequence
BlockExtractable Extractable
extractSplicedmRNASequence
Transcript
extractTranscribedRNASequence
Transcript
extras
CovariateKey CovariateSpace
extrasTables
ExtrasTables