org.bdgenomics.adam.cli

# PluginExecutor

#### object PluginExecutor extends BDGCommandCompanion

This set of classes executes a plugin along with the associated input location.

Example usage: adam plugin org.bdgenomics.adam.plugins.Take10Plugin reads12.sam

`org.bdgenomics.adam.plugins.Take10Plugin` is a simple example plugin. The org.bdgenomics.adam.plugins.ADAMPlugin interface defines the class that will run using this command.

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BDGCommandCompanion, AnyRef, Any
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1. PluginExecutor
2. BDGCommandCompanion
3. AnyRef
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### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

2. #### final def !=(arg0: Any): Boolean

   Definition Classes
     Any

3. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

4. #### final def ==(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

5. #### final def ==(arg0: Any): Boolean

   Definition Classes
     Any

6. #### def apply(cmdLine: Array[String]): BDGCommand

   Definition Classes
     PluginExecutor → BDGCommandCompanion

7. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

8. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

9. #### val commandDescription: String

   Definition Classes
     PluginExecutor → BDGCommandCompanion

10. #### val commandName: String

    Definition Classes
      PluginExecutor → BDGCommandCompanion

11. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

12. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

13. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

14. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

15. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

16. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

17. #### def main(cmdLine: Array[String]): Unit

    Definition Classes
      BDGCommandCompanion

18. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

19. #### final def notify(): Unit

    Definition Classes
      AnyRef

20. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

21. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

22. #### def toString(): String

    Definition Classes
      AnyRef → Any

23. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

24. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

25. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from BDGCommandCompanion

### Inherited from AnyRef

### Inherited from Any

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