OFFSET_SIZE
TwoBitFile
OMIM_KEYS
VariantAnnotationConverter
Observation
recalibration
ObservationAccumulator
recalibration
ObservationAccumulatorComb
Timers
ObservationAccumulatorSeq
Timers
ObservationTable
recalibration
OptionalPositionOrdering
models
OptionalReferenceOrdering
models
OptionalRegionOrdering
models
OrientedPoint
Coverage
observed
BaseQualityRecalibration
omimId
DatabaseVariantAnnotationField
onlyReadMapped
DuplicateMetrics
opt
ReferenceRegion
optionOrdering
Coverage
orderingForOptionalPositions
ReferencePosition ReferenceRegion
orderingForPositions
ReferencePosition ReferenceRegion
org
root
orientation
ReferencePosition ReferenceRegion
origQual
AlignmentRecordField
outputFormatClass
InstrumentedADAMAvroParquetOutputFormat InstrumentedADAMBAMOutputFormat InstrumentedADAMSAMOutputFormat
outstream
AvroSerializer
overlap
TargetOrdering
overlaps
ReferenceRegion
overlapsReferencePosition
RichAlignmentRecord
overwriteExistingTags
MDTagging