org.bdgenomics.adam.plugins

# ADAMPlugin

#### trait ADAMPlugin[Input, Output] extends AnyRef

Defines the interface for a Plugin for the ADAMSystem.

A simple interface is available in org.bdgenomics.adam.plugins.Take10Plugin.

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### Abstract Value Members

1. #### abstract def predicate: Option[(Input) ⇒ Boolean]

   The records that are applicable to this Plugin

   The records that are applicable to this Plugin

   returns

     If there is no filter for this plugin, None If a filter is applicable, a true response means record is included; a false means record is excluded

2. #### abstract def projection: Option[Schema]

   The projection to push down into Parquet

   The projection to push down into Parquet

   returns

     If all fields are required or the specific projection is not known, None If a subset of fields on Input are required, an Avro schema with those fields

3. #### abstract def run(sc: SparkContext, recs: RDD[Input], args: String): RDD[Output]

   Method to create the transformations on the RDD.

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