LoadAlignmentRecords
Timers
LoadFragments
Timers
label
Symbol
leftAlignIndel
NormalizationUtils
length
ReferenceRegion SequenceRecord
lengths
GenomicPositionPartitioner
library
RecordGroup
listToJavaList
ADAMContext ImplicitJavaConversions
listToString
VcfStringUtils
loadAlignments
ADAMContext
loadAlignmentsFromPaths
ADAMContext
loadBED
ADAMContext
loadBam
ADAMContext
loadFasta
ADAMContext
loadFastq
ADAMContext
loadFeatures
ADAMContext
loadFragments
ADAMContext
loadGTF
ADAMContext
loadGenes
ADAMContext
loadGenotypes
ADAMContext
loadIndexedBam
ADAMContext
loadInterleavedFastq
ADAMContext
loadInterleavedFastqAsFragments
ADAMContext
loadIntervalList
ADAMContext
loadNarrowPeak
ADAMContext
loadPairedFastq
ADAMContext
loadParquet
ADAMContext
loadParquetAlignments
ADAMContext
loadParquetContigFragments
ADAMContext
loadParquetFeatures
ADAMContext
loadParquetFragments
ADAMContext
loadParquetGenotypes
ADAMContext
loadParquetVariantAnnotations
ADAMContext
loadParquetVariants
ADAMContext
loadReferenceFile
ADAMContext
loadSequence
ADAMContext
loadUnpairedFastq
ADAMContext
loadVariantAnnotations
ADAMContext
loadVariants
ADAMContext
loadVcf
ADAMContext
loadVcfAnnotations
ADAMContext
logProbabilityToPhred
PhredUtils
lookup
RecalibrationTable
lt
TargetOrdering