WriteADAMRecord
Timers
WriteBAMRecord
Timers
WriteSAMRecord
Timers
width
Interval
window
Coverage
withMateMappedToDiffChromosome
FlagStatMetrics
withMateMappedToDiffChromosomeMapQ5
FlagStatMetrics
withSelfAndMateMapped
FlagStatMetrics
write
ReadBucketSerializer ReferencePositionPairSerializer ReferencePositionSerializer ReferenceRegionSerializer SingleReadBucketSerializer TargetSetSerializer ZippedTargetSetSerializer AvroSerializer TwoBitFileSerializer
writeArray
ReadBucketSerializer SingleReadBucketSerializer
writeOptionalReferencePos
ReferencePositionPairSerializer
writer
AvroSerializer