EmptyAccessControl
plugins
Exon
models
Extractable
models
ExtrasTables
recalibration
empiricalErrorProbability
Observation
empiricalQuality
Observation
empty
RecordGroupDictionary SequenceDictionary DuplicateMetrics Aggregate Observation
emptyFailedQuality
FlagStatMetrics
emptyPassedQuality
FlagStatMetrics
enableVisitLogging
BaseQualityRecalibration
encoder
AvroSerializer
encoding
IntervalListReader
end
Interval ReferenceRegion AlignmentRecordField FeatureField VariantField MdTag
endpoints
NonoverlappingRegions
ensemblGeneId
DatabaseVariantAnnotationField
ensemblTranscriptIds
DatabaseVariantAnnotationField
entries
ObservationTable
equals
RecordGroup SequenceDictionary SequenceRecord CovariateKey CovariateSpace CycleCovariate DinucCovariate Observation RichVariant MdTag QualityScore
errorProbability
QualityScore
errorProbabilityToPhred
PhredUtils
exonId
Exon
exons
Transcript
expectedMismatches
Aggregate
extract
ReferenceContigMap ReferenceFile TwoBitFile
extractCodingSequence
Transcript
extractSequence
BlockExtractable Extractable
extractSplicedmRNASequence
Transcript
extractTranscribedRNASequence
Transcript
extras
CovariateKey CovariateSpace
extrasTables
ExtrasTables