FILE_INDEX_OFFSET
TwoBitFile
FORMAT_KEYS
VariantAnnotationConverter
FastqRecordConverter
converters
FeatureField
projections
FeatureFile
features
FeatureParser
features
FeatureRDDFunctions
features
FieldEnumeration
projections
FieldValue
projections
Filter
projections
FindTargets
Timers
FlagStat
read
FlagStatMetrics
read
Flattener
util
Float
TagType
FragmentConverter
converters
FragmentRDDFunctions
fragment
failedQuality
FlagStatMetrics
failedVendorQualityChecks
AlignmentRecordField
featureId
FeatureField
featureType
FeatureField
features
rdd
fileStart
BAMFilteredRecordReader
filter
MultiContigNonoverlappingRegions
filterByOverlappingRegion
FeatureRDDFunctions AlignmentRecordRDDFunctions GenotypeRDDFunctions
find
RegExp
findConsensus
ConsensusGenerator ConsensusGeneratorFromKnowns ConsensusGeneratorFromReads
findCoverageRegions
Coverage
findFiles
ADAMContext
findOverlappingRegions
NonoverlappingRegions
findTargets
RealignmentTargetFinder
fivePrimePosition
RichAlignmentRecord
fivePrimeReferencePosition
RichAlignmentRecord
flankAdjacentFragments
NucleotideContigFragmentRDDFunctions
flattenRecord
Flattener
flattenSchema
Flattener
flowOrder
RecordGroup
foreach
IntervalListReader ParquetFileTraversable
formatHeaderLines
VariantAnnotationConverter
fragment
rdd
fragmentNumber
NucleotideContigFragmentField
fragmentSequence
NucleotideContigFragmentField
fragmentStartPosition
NucleotideContigFragmentField
fromADAMContig
SequenceRecord
fromADAMContigFragment
SequenceRecord
fromADAMRecord
SequenceRecord
fromAvro
RecordGroup
fromErrorProbability
QualityScore
fromRdd
UnalignedReadRDD
fromSAMHeader
RecordGroupDictionary SequenceDictionary
fromSAMReader
RecordGroupDictionary SequenceDictionary
fromSAMSequenceDictionary
SequenceDictionary
fromSAMSequenceRecord
SequenceRecord
fromSpecificRecord
SequenceRecord