JavaAlignmentRecordRDD

Value Members

1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. def adamSAMSave(filePath: String, asSam: Boolean, asSingleFile: Boolean, isSorted: Boolean): Unit

   Saves this RDD to disk as a SAM/BAM file.

   Saves this RDD to disk as a SAM/BAM file.

   filePath

   Path to save the file at.

   asSam

   If true, saves as SAM. If false, saves as BAM.

   asSingleFile

   If true, saves output as a single file.

   isSorted

   If the output is sorted, this will modify the header.

7. def adamSave(filePath: String): Unit

   Saves this RDD to disk as a Parquet file.

   Saves this RDD to disk as a Parquet file.

   filePath

   Path to save the file at.

8. def adamSave(filePath: String, blockSize: Integer, pageSize: Integer, compressCodec: CompressionCodecName, disableDictionaryEncoding: Boolean): Unit

   Saves this RDD to disk as a Parquet file.

   Saves this RDD to disk as a Parquet file.

   filePath

   Path to save the file at.

   blockSize

   Size per block.

   pageSize

   Size per page.

   compressCodec

   Name of the compression codec to use.

   disableDictionaryEncoding

   Whether or not to disable bit-packing.

9. final def asInstanceOf[T0]: T0

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10. def clone(): AnyRef

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    protected[java.lang]

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11. final def eq(arg0: AnyRef): Boolean

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12. def equals(arg0: Any): Boolean

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13. def finalize(): Unit

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    protected[java.lang]

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14. final def getClass(): Class[_]

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15. def hashCode(): Int

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16. final def isInstanceOf[T0]: Boolean

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17. val jrdd: JavaRDD[AlignmentRecord]

18. final def ne(arg0: AnyRef): Boolean

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19. final def notify(): Unit

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20. final def notifyAll(): Unit

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21. val rgd: RecordGroupDictionary

22. val sd: SequenceDictionary

23. final def synchronized[T0](arg0: ⇒ T0): T0

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24. def toString(): String

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25. final def wait(): Unit

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26. final def wait(arg0: Long, arg1: Int): Unit

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27. final def wait(arg0: Long): Unit

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