1. org
   1. org.bdgenomics
      1. org.bdgenomics.adam
         1. org.bdgenomics.adam.cli
            1. (class)About
            2. (object)(class)ADAM2Fasta
            3. (class)ADAM2FastaArgs
            4. (object)(class)Adam2Fastq
            5. (class)Adam2FastqArgs
            6. (object)(class)ADAM2Vcf
            7. (class)ADAM2VcfArgs
            8. (object)(class)ADAMMain
            9. (class)ADAMModule
            10. (object)(class)AlleleCount
            11. (class)AlleleCountArgs
            12. (object)
                AlleleCountHelper
            13. (object)(class)CalculateDepth
            14. (class)CalculateDepthArgs
            15. (case class)CommandGroup
            16. (object)(class)CountContigKmers
            17. (class)CountContigKmersArgs
            18. (object)(class)CountReadKmers
            19. (class)CountReadKmersArgs
            20. (trait)DictionaryCommand
            21. (object)(class)Fasta2ADAM
            22. (class)Fasta2ADAMArgs
            23. (object)(class)Features2ADAM
            24. (class)Features2ADAMArgs
            25. (object)(class)FlagStat
            26. (class)FlagStatArgs
            27. (object)(class)Flatten
            28. (class)FlattenArgs
            29. (object)(class)Fragments2Reads
            30. (class)Fragments2ReadsArgs
            31. (object)(class)ListDict
            32. (class)ListDictArgs
            33. (object)(class)PluginExecutor
            34. (class)PluginExecutorArgs
            35. (object)(class)PrintADAM
            36. (class)PrintADAMArgs
            37. (object)(class)PrintGenes
            38. (class)PrintGenesArgs
            39. (object)(class)PrintTags
            40. (class)PrintTagsArgs
            41. (object)(class)Reads2Fragments
            42. (class)Reads2FragmentsArgs
            43. (object)(class)Transform
            44. (class)TransformArgs
            45. (object)(class)Vcf2ADAM
            46. (class)Vcf2ADAMArgs
            47. (object)(class)VcfAnnotation2ADAM
            48. (class)VcfAnnotation2ADAMArgs
            49. (object)(class)View
            50. (class)ViewArgs
            51. (class)Wig2BedArgs
            52. (object)(class)WigFix2Bed